Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1245 ATGGAATCAACATGCGTGGATACCTCACTCAATCTTAACGATGGGGTTTTGGTGGAAGAGTTGCGTCGTCTAAGCTGCGAGAACAAGAGGTTGACCGAGGCGTTGACCCACTTGTGTGAGAACTACATGTCTCTGAAGAAGCAATTGGGCCAATTGACCAACACGAATTTTCATGAGCAAGACCCATTAATTGAATCATCACGCAAGAGAAAAGCATCAGAGAGTGATTACCAGTGTTGCACCAACAAATTTGTTGGTGTTAATAGTAATGCTGAGTGCAGTGCCATCCCTGAGGACTCATTCAAAAAGTTCAACAACTCATCTAAAGTTTCCAAAGTACTTGTCAGGACTGAAGCATCAAATAATAGCTTAAAGGTCACTAGGGATAACCCTTCTCCTAGAGCTTACTTCAGGTGCTCCTTTGCCCCAAACTGCCCCGTGAAAAAGAAGGTGCAAAGGAGTATAGAGGACCCTACAATACTTGTTACAACGTATGAAGGAGAGCATAACCATGGTCATCAAAGAGCAGAAATATCACTTGTCTCAAACCAAAGTGGTGAATCCCCAAAACTTAAAGGAGGGTCAAGTCCTGTGTCCTCATCACCTACACCCACAGTTCGAAGCCCCACAACGCTTGATTTGGTCAAGTCAGGATTGGTTGAAGAACTTGATGAAAGTGCCCAAAAAAAGTCCTCTTCTATCTACCAGTTTTTGGTTCAACAAATGGCTACTTCTTTGACAAGGGACCCCAGTTTCACAACAGCACTTGCCACTGCCATTTCGGGAAAAATTCTTGAGGCCAAATGGAATCGGAAGAAACCGTCACTCCCTCACGGCGGCGCAACCCACCGTCACCAGCGGCCTTTCCTCCCATTGAAATCATCTTCGATTGGGACGCAAGCGGAGAGAGAAGAAAAGGTGTCTCTGGAACTCAGCGAAGAAATGCTTCAGAGTATGGAAGTGGGAATGTCCTTCAAAGACTATAATGGTAGAATTAGTTCCTTGGATTTTCACAGGGCATCCAGTTATCTAGTGACTGCCAGTGATGATGAATCCATTCGTCTTTATGAGGTTACCAGCGGAACATGTTTGAAGACAATTAATAGCAAGAAGTATGGAGTTGACCTGGTTTGCTTCACATCTCATCCTACAACTGTCATCTACTCTTCAAAAAATGGTTGGGATGAATCTTTGCGGCTTCTATCGTTGCATGATAACAAGTATCTGAGATATTTCAAAGGTCACCATCACAGGGTTGTGTCGCTAAGCTTGTGCTCTCGGAAAGACTGCTTTATATCTGGATCTCTAGATCGAACTGTTTTACTGTGGGATCAAAGGGCTGAGAAGTGCCAGGGACTTTTACATGTACAAGGAAGGCCTGCTATATCATATGATGATCAAGGGCTTGTCTTTGCAATTGCCTTCGGAGGGTGCATAAGAATGTTTGATTCTCGCAAGTATGAAAAGGGTCCCTTTGAGATATTTTCTGTCGGGGGAGATATTTCTGATGCAAATGTTGTGAAATTTAGTAATGATGGGAGACTCATGCTTTTAACAACAGCAGATGGGCATATTCATGTGCTTGACTCATTTCGTGGCACCCTTTTATCCACATATAATGTCACACCTGTCTCATGCAACTCCACATTAGAAGCTTCTTTCAGCCCTGAGGGAATGTTTGTAATATCTGGTTCTGGGGATGGCAGCATCTACGCATGGAGTGTTCGAAGTGGCAAAGAAGTTGCAAGTTGGAGGAGTGCAACTTCTGATACTGGACCTCCTGTAATAAAGTGGGCTCCTGGAAATCTTATGTTTGCAACAGGATCATCTGAGTTGTCATTCTGGGTTCCTGATTTGTCTAAGTTGGGATCTTATGTTGGAAGAAAGTAG 1890 0.4376 MESTCVDTSLNLNDGVLVEELRRLSCENKRLTEALTHLCENYMSLKKQLGQLTNTNFHEQDPLIESSRKRKASESDYQCCTNKFVGVNSNAECSAIPEDSFKKFNNSSKVSKVLVRTEASNNSLKVTRDNPSPRAYFRCSFAPNCPVKKKVQRSIEDPTILVTTYEGEHNHGHQRAEISLVSNQSGESPKLKGGSSPVSSSPTPTVRSPTTLDLVKSGLVEELDESAQKKSSSIYQFLVQQMATSLTRDPSFTTALATAISGKILEAKWNRKKPSLPHGGATHRHQRPFLPLKSSSIGTQAEREEKVSLELSEEMLQSMEVGMSFKDYNGRISSLDFHRASSYLVTASDDESIRLYEVTSGTCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHHRVVSLSLCSRKDCFISGSLDRTVLLWDQRAEKCQGLLHVQGRPAISYDDQGLVFAIAFGGCIRMFDSRKYEKGPFEIFSVGGDISDANVVKFSNDGRLMLLTTADGHIHVLDSFRGTLLSTYNVTPVSCNSTLEASFSPEGMFVISGSGDGSIYAWSVRSGKEVASWRSATSDTGPPVIKWAPGNLMFATGSSELSFWVPDLSKLGSYVGRK 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1245 629 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 366 IPR001680 GO:0005515
Aed6g1245 629 MobiDBLite consensus disorder prediction 183 210 - -
Aed6g1245 629 Pfam WRKY DNA -binding domain 125 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed6g1245 629 Gene3D WRKY domain 121 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed6g1245 629 Pfam WD domain, G-beta repeat 548 573 IPR001680 GO:0005515
Aed6g1245 629 Pfam WD domain, G-beta repeat 408 444 IPR001680 GO:0005515
Aed6g1245 629 Pfam WD domain, G-beta repeat 330 356 IPR001680 GO:0005515
Aed6g1245 629 ProSiteProfiles WRKY domain profile. 125 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed6g1245 629 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 412 444 - -
Aed6g1245 629 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 298 628 - -
Aed6g1245 629 ProSiteProfiles Trp-Asp (WD) repeats profile. 553 583 IPR001680 GO:0005515
Aed6g1245 629 SUPERFAMILY WRKY DNA-binding domain 125 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed6g1245 629 SMART WD40_4 532 574 IPR001680 GO:0005515
Aed6g1245 629 SMART WD40_4 318 357 IPR001680 GO:0005515
Aed6g1245 629 SMART WD40_4 490 529 IPR001680 GO:0005515
Aed6g1245 629 SMART WD40_4 405 444 IPR001680 GO:0005515
Aed6g1245 629 SUPERFAMILY WD40 repeat-like 323 612 IPR036322 GO:0005515
Aed6g1245 629 ProSiteProfiles Trp-Asp (WD) repeats profile. 412 444 IPR001680 GO:0005515
Aed6g1245 629 Gene3D - 310 615 IPR015943 GO:0005515
Aed6g1245 629 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 361 - -
Aed6g1245 629 PANTHER WD40 REPEAT PROTEIN SWD2 298 628 IPR037867 GO:0048188
Aed6g1245 629 SMART WRKY_cls 125 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed6g1245 629 Coils Coil 21 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1245 Aed-Chr6 17260987 17267101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1245 3 272 WRKY Transcription Factor Family AT1G80840 39.935 4.76e-52 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aed6g1245 WRKY 4.4e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1245 K14962 - gmx:100810444 644.039