Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1237 ATGATAACTTGGAACCTTTTGCACGCAAGAATAATAAGTTGTACACACGCAATAGCACTTTTATTATTTCTTCTTCATTGTTTGTTGTTGGTCAAAGAAGCAGCAGCAGCACCTGTGAACCCTGAATATTCTTCAAGCTGTGATATGGGATACCTTAATTCAGTTTTGTCCTCTTCAGGCCAAATTCATGCTGCAGAAGATTCACCTGTCAGTGGAGGGGGCCTCAGTCAGAATGGCAAATTCAGCTATGGGTATGCTAGCTCCCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAAAATTGACGGTGTTGATGGTGAAATTGTTGGCCTTTTTGGAGTTTTTGATGGCCATGGTGGTGCTCGTGCTGCCGAGTATGTCAAGCAAAACCTATTTAGCAATTTGATCAGTCATCCAAAATTCATTTCTGATACCAAATCTGCAATAGCTGATGCATATATCCATACCGACTCTGAATTTCTGAAATCTGAAAATAGTCAAAACAAAGATGCTGGATCAACTGCTTCCACTGCCATTCTTGTCGGTGACCGTTTGGTTGTTGCAAATGTTGGGGACTCCAGAGTTGTTATATGCAGGGGTGGAAATGCCATTGCTGTTTCTCGAGATCACAAGCCGGACCAAACTGATGAGAGGCAAAGGATTGAAGATGCAGGTGGCTTTGTTATGTGGGCTGGAACTTGGAGAGTTGGTGGTGTTCTTGCTGTTTCACGTGCATTTGGTGATAGACTCCTGAAGCAGTATGTTGTTGCTGATCCGGAAATCCGGGAAGAAAAGGTTGATAGTTCCCTTGAATTTCTTATATTGGCCAGTGATGGGCTATGGGATGTCGTCTCAAACGAGGAAGCTGTTGCTATGACTAAACAAATCGAGGATGCAGAGGACGCAGCAAAGAGGCTGATGAAAGAAGCATATCAGCGAGGCAGTGCTGACAACATCACGTGTGTTGTTGTTCGTTTCTTGTCGAGCCAAGGTGCCTCTTCTCACAGTAACTCCGGCTAA 1026 0.4386 MITWNLLHARIISCTHAIALLLFLLHCLLLVKEAAAAPVNPEYSSSCDMGYLNSVLSSSGQIHAAEDSPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETKIDGVDGEIVGLFGVFDGHGGARAAEYVKQNLFSNLISHPKFISDTKSAIADAYIHTDSEFLKSENSQNKDAGSTASTAILVGDRLVVANVGDSRVVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIREEKVDSSLEFLILASDGLWDVVSNEEAVAMTKQIEDAEDAAKRLMKEAYQRGSADNITCVVVRFLSSQGASSHSNSG 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1237 341 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 51 337 - -
Aed6g1237 341 ProSiteProfiles PPM-type phosphatase domain profile. 82 328 IPR001932 -
Aed6g1237 341 Coils Coil 291 311 - -
Aed6g1237 341 CDD PP2Cc 81 328 IPR001932 -
Aed6g1237 341 SUPERFAMILY PP2C-like 76 328 IPR036457 -
Aed6g1237 341 PANTHER ALPHABET, ISOFORM E-RELATED 51 337 - -
Aed6g1237 341 SMART PP2C_SIG_2 77 328 IPR001932 -
Aed6g1237 341 ProSitePatterns PPM-type phosphatase domain signature. 113 121 IPR000222 GO:0043169
Aed6g1237 341 Pfam Protein phosphatase 2C 111 321 IPR001932 -
Aed6g1237 341 Gene3D - 74 334 IPR036457 -
Aed6g1237 341 SMART PP2C_4 72 326 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1237 Aed-Chr6 17153213 17158800 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1237 49 340 PP2C-type Phosphatase Gene Family AT4G31750 88.699 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1237 K17506 - gmx:547661 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1237 6 17153213 17158800 Aed6g1237 6 17153213 17158800 ECH