Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1230 ATGTCGTCGGTGTACGTTCTAGAGCCTCCAACGAAGGGGAAAGTGGTGGTGAACACCACGCGCGGCCCCTTGGACATTGAGCTGTGGCCGAAAGAGGCTCCGAAAGCCGTGAGGAACTTCGTTCAGCTCTGCCTCGAAAACTACTACGACAACACCATCTTCCACCGCATCATCAAGGACTTCCTCGTCCAAGGCGGCGACCCCACCGCCACTGGCACCGGAGGTGAAAGCATTTATGGTGGTGTTTTTGCTGATGAGTTTCATTCACGTCTGAAATTCAAGCACAGAGGAATAGTTGCAATGGCCAATGCTGGAACTTCAAATTCCAATGGAAGTCAGGATGCATTGATGGTTCTTCTCACTGTGACGGGAGATACAATGTATAATCTTTTGAGAGTGGGTGAACTTGAAACTGATAAGAATGACCGACCTTTAGATCCGCCGAAGATATTATCAGTTGAGGTGTTATGGAATCCATTTGAAGATATTATTCCGAGAACACTTCAAAAATCTCAGACTGAGGCTAAAGCTGATACAAAAAATAAAGAGTCAGGGAAGAAAGGCGTAAAAAAATTGAACTTGCTTTCATTCGGGGAAGAAGCTGAAGAAGAGGAAAAGGAATTGGCATCGGTGAAGCAAAAGATTAAGAGCAGTCATGATGTCTTGAATGATCCTCGTCTTCTAAAGGAAGAAACTCTTAATAATGAACTGAGTTCTGCAAGAAGAGATATGCAGTTATCTGTAAGGGATGCACTTAACTCAAAGAAAGAAGAGCCTCAGAAAAATTCAGAAGCTGGTGACATGGCTCGTCCTGATTTCAGTGATGACGATGAAGCAGATTTTGATTCAAGAATGCGCATGCAAATACTCAAAAAGCGGAAGGAGTTGGGTGATCTCCCTCCGAAGCCAAAGTTGCAAAATGTTTGTAGCATCTCAACCTCTGATCTAGGGAATGTTTCTGGTTCTACCTATGCAAGAAGAGGAAGGTCCAGTCCAGAAAACCATGATATGTCAGCAGCCAGGTCCAATGCTGTAAGTGTTGATGAGGATCAACCAAAGGTGGAAAAGTTGTCCTTGAAGAAAAAGGGAGTTGGATCTGAAGCAAGAGCTGAACGAATGGCTAATGCAGATGCAGATTTGCAGCTATTGAATCAAGCTGAAAGAGGAAGACAATTGCAGATGCAGAAGAGACGCAGACTTCAAGGGCGTGAAAATGACGTTCTGGCAAAACTTGAAAAATTTAAGAGTGCTTTATCGGCAAAGGAGACACCCCCGACTGATGAATCTGAAAATGTTAATAATGAGGAATTGTCTGACTGGAAAGGTGTTAGTTTAAAATTTACCCCCGAGACCGGCAAGGACCGCATGTCTCGCAACGAGGACCCAAATGATTACGTCGTGCATGATCCTCTTTTGGAGAAGGGGAAAGAGAAGTTCAATAGGATGATAGCCAAACAAAAGAAAAAAGAACGAGAGTGGGCTGGGAGATCCCTTACTTGA 1500 0.442 MSSVYVLEPPTKGKVVVNTTRGPLDIELWPKEAPKAVRNFVQLCLENYYDNTIFHRIIKDFLVQGGDPTATGTGGESIYGGVFADEFHSRLKFKHRGIVAMANAGTSNSNGSQDALMVLLTVTGDTMYNLLRVGELETDKNDRPLDPPKILSVEVLWNPFEDIIPRTLQKSQTEAKADTKNKESGKKGVKKLNLLSFGEEAEEEEKELASVKQKIKSSHDVLNDPRLLKEETLNNELSSARRDMQLSVRDALNSKKEEPQKNSEAGDMARPDFSDDDEADFDSRMRMQILKKRKELGDLPPKPKLQNVCSISTSDLGNVSGSTYARRGRSSPENHDMSAARSNAVSVDEDQPKVEKLSLKKKGVGSEARAERMANADADLQLLNQAERGRQLQMQKRRRLQGRENDVLAKLEKFKSALSAKETPPTDESENVNNEELSDWKGVSLKFTPETGKDRMSRNEDPNDYVVHDPLLEKGKEKFNRMIAKQKKKEREWAGRSLT 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1230 499 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 136 IPR002130 GO:0000413|GO:0003755
Aed6g1230 499 MobiDBLite consensus disorder prediction 251 300 - -
Aed6g1230 499 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 113 IPR002130 GO:0000413|GO:0003755
Aed6g1230 499 PANTHER SPLICEOSOME-ASSOCIATED PROTEIN CWC27 HOMOLOG 5 190 - -
Aed6g1230 499 CDD cyclophilin_CeCYP16-like 8 167 - -
Aed6g1230 499 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Aed6g1230 499 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Aed6g1230 499 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 97 112 IPR002130 GO:0000413|GO:0003755
Aed6g1230 499 Coils Coil 194 221 - -
Aed6g1230 499 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Aed6g1230 499 MobiDBLite consensus disorder prediction 415 472 - -
Aed6g1230 499 MobiDBLite consensus disorder prediction 348 372 - -
Aed6g1230 499 SUPERFAMILY Cyclophilin-like 14 172 IPR029000 -
Aed6g1230 499 MobiDBLite consensus disorder prediction 306 328 - -
Aed6g1230 499 MobiDBLite consensus disorder prediction 451 472 - -
Aed6g1230 499 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 5 190 IPR044666 -
Aed6g1230 499 MobiDBLite consensus disorder prediction 391 407 - -
Aed6g1230 499 MobiDBLite consensus disorder prediction 251 372 - -
Aed6g1230 499 MobiDBLite consensus disorder prediction 388 407 - -
Aed6g1230 499 Gene3D - 2 170 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1230 Aed-Chr6 17037341 17044133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1230 9 160 U-box Gene Family AT5G67530 43.636 6.68e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1230 K12737 - gmx:100793148 816.994