LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g1229	ATGTCTTCCCATGATGGCGGTGCCGCCACTATGCCGCTGTCACCCTTAAATGTCACCATGGTGGCTGTAGACAAAGACAAGAATAGTGGCTATGCCTTCCGTTGGACGATTACGCATATCAATAACCCTGTCATTATTGCTGTCCATGTCAAGAATAAAAACATTTCTCATCCACAGGGCAGCAATGTTTTTCCTCCCGACGAGGACGAAATAGGCCATGTTTTCAAACCCTTACGTCAACTATGTGATGGCAACGTGAGTGTTGAAATTAATTTAATGAATGAAATGATGGTTATGTTGAAAGAAGCCGTAGTGGATGATAGTGATCCTGTGAAAGGAATTGTGGAATATGCACAGAGAAATGGCGTGAATACTATAGTCGTTGGTGCACCTCACTCGACCAAAAATACTTTCACTTTTGCACGGACTCTCAACCTCAGGAGCGGAAGCAAAAAATATAAAGTCCATAACGATGTGTCAACAGGAGTAATGAAATCAGCACCAGATTATAGTTCAGTGTACGTAATTTCAAAAGGGAAGATAGTGGGAGCTCGACCTGCAATACGCCCAATAGTGAACGTGATTGCATCACCAAGAGAAAATGGAGTAAGGACACATTCAATTAGAAGAGGGAGCACCAATGGAAGATCAGGAAGATCACCTCAGCTTGAAATGTCAAGGTGTTCTTCAGCTGGTCAGTCAAGGAATCAGAGGTCACTATTTTGCCACACCACGGTTGAAACTAACAACACTCCAGGGTCACATAAGTTTGACTCAGTAGATGTAAATAAACAAGATTGTGATTTAGGCTCTCCATCGGATTCCCAATTCTTAGCTAAAGAGATTAGCCGATGGAAGGAGGAACGTATAGCTGAGGAAGCTACTGAGTTGTCTAAAGAGGCAGTTCTTGAACTGGCAGAAACGGAGAGATTCAAAGCAAAAGCTGCATTGGAAGCAGCTGAGGAAGCCATTAAGATGGTTGAGAAGGAAACACATAGAAGATTTAAGGCAGAGGTGAAGGCCAGGAGAGAAGCACATGAGAAGCATAGAGCATTGAATCAGTTGCATAGCAACGATACTCGGTACAGAAAATACAGCATAAATGATATTGAAGAGGCCACTCAGAAGTTCTCCCCATCATTGAAAGTAGGTGAAGGTGGATATGGACCTGTGTTCAGAGGCCAACTTGATCACACTCCGGTTGCAATCAAAATTTTAAACCCAGAAGCTTCCCATGGCAGGAAGCAGTTCCAACAAGAGGTCCAGATACTATGCAGCATAAGGCACCCTAACATGGTCCTCCTCCTTGGCGCGTGTCCCGAGTACGGATGCCTAGTGTATGAGTACATGGAGAATGGTAGCTTAGAAGACAGATTGCTGATGAGAAACAACAGCCCTCCAATTCCATGGTGGAAGCGTTTTGAGATAGCTGCTGAGCTTGCAACTGCACTCCTTTTCCTCCACCAAACAAAGCCGGAGCCAATCGTGCACCGCGACCTCAAGCCTGCAAACATCCTCTTGGACAAGAACTTTGTGAGCAAAATAAGTGATGTAGGCCTTGCAAGGCTAGTGCCACCTTCTGTGGCTGATTCTGTCACACAATATCACTTGACTGCAGCTGCTGGAACATTATGTTACATTGACCCTGAGTATCAGCAAACAGGAAAGTTAACAAAGAAGTCAGATATATATTCTTTGGGGATAATGCTGCTACAAATCATCACAGCCAAGCCTCCAATGGGGCTAGCACACCATGTCATGAGGGCAATTGAGGATGGAAAGTTTTCAGAAATGCTTGATCCAATGATTTGTGACTGTCCACTTGAAGAGGCTCTTGCATTTGCCAAACTCTCGTTGAGCTGTGCTGAACTCAGCAAGAAGGACAGGCCGGATCTTGGAACCGTGGTGAGCCCGGAGCTTAACCGATTGAGGGACTTTGGATTGGCATTTAAGAACCGTGGCAGCAGCAGCCACTCTCCACGCCCTCCCACGCCTCCTAGGCAGAGTCCACAATCATAG	2019	0.4537	MSSHDGGAATMPLSPLNVTMVAVDKDKNSGYAFRWTITHINNPVIIAVHVKNKNISHPQGSNVFPPDEDEIGHVFKPLRQLCDGNVSVEINLMNEMMVMLKEAVVDDSDPVKGIVEYAQRNGVNTIVVGAPHSTKNTFTFARTLNLRSGSKKYKVHNDVSTGVMKSAPDYSSVYVISKGKIVGARPAIRPIVNVIASPRENGVRTHSIRRGSTNGRSGRSPQLEMSRCSSAGQSRNQRSLFCHTTVETNNTPGSHKFDSVDVNKQDCDLGSPSDSQFLAKEISRWKEERIAEEATELSKEAVLELAETERFKAKAALEAAEEAIKMVEKETHRRFKAEVKARREAHEKHRALNQLHSNDTRYRKYSINDIEEATQKFSPSLKVGEGGYGPVFRGQLDHTPVAIKILNPEASHGRKQFQQEVQILCSIRHPNMVLLLGACPEYGCLVYEYMENGSLEDRLLMRNNSPPIPWWKRFEIAAELATALLFLHQTKPEPIVHRDLKPANILLDKNFVSKISDVGLARLVPPSVADSVTQYHLTAAAGTLCYIDPEYQQTGKLTKKSDIYSLGIMLLQIITAKPPMGLAHHVMRAIEDGKFSEMLDPMICDCPLEEALAFAKLSLSCAELSKKDRPDLGTVVSPELNRLRDFGLAFKNRGSSSHSPRPPTPPRQSPQS	672

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed6g1229	672	ProSiteProfiles	Protein kinase domain profile.	377	640	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed6g1229	672	SUPERFAMILY	Protein kinase-like (PK-like)	356	636	IPR011009	-
	Aed6g1229	672	MobiDBLite	consensus disorder prediction	650	672	-	-
	Aed6g1229	672	CDD	STK_N	18	179	-	-
	Aed6g1229	672	PANTHER	OS02G0152300 PROTEIN	13	279	-	-
	Aed6g1229	672	PANTHER	OS02G0152300 PROTEIN	279	668	-	-
	Aed6g1229	672	CDD	STKc_IRAK	383	643	-	-
	Aed6g1229	672	Gene3D	Phosphorylase Kinase; domain 1	354	449	-	-
	Aed6g1229	672	MobiDBLite	consensus disorder prediction	202	224	-	-
	Aed6g1229	672	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	20	132	-	-
	Aed6g1229	672	Gene3D	HUPs	8	166	IPR014729	-
	Aed6g1229	672	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	495	507	IPR008271	GO:0004672\|GO:0006468
	Aed6g1229	672	MobiDBLite	consensus disorder prediction	207	224	-	-
	Aed6g1229	672	SMART	serkin_6	377	640	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed6g1229	672	PANTHER	ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE	279	668	-	-
	Aed6g1229	672	PANTHER	ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE	13	279	-	-
	Aed6g1229	672	Gene3D	Transferase(Phosphotransferase) domain 1	450	657	-	-
	Aed6g1229	672	Coils	Coil	303	330	-	-
	Aed6g1229	672	Pfam	Protein tyrosine and serine/threonine kinase	382	636	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g1229	Aed-Chr6	17030234	17034625	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed6g1229	100	647	Receptor kinase-like Gene Family	AT5G12000	51.294	0.0	580

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Aed6g1229		PK_Tyr_Ser-Thr	5.4e-40	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed6g1229	-		-	gmx:100786386	1027.7