LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g1223	ATGGCGGGTCAGTCCTCCAATGAAGGCTCCAGTACTGGAAAAATTTCCGCAGAATGTTCAGATTCAACTGTTCAGCTCAATATCAAGACTCTAGAATCCCGCATCTACAGTTTTCAAGTGGACAAAAATATGCCTGTTTCGTTGTTCAAAGAGAAAATTGCAAATGAAATTGGTGTTCCTGTTAATCAGCAACGGCTGATATTTAGAGGAAAAGTCTTAAAGGATGAGCACGTTCTTTCTGAGTATCATGTTGAGAATGGGCATACATTGCATTTGGTTGAAAGACAACCAAATCAGTCACAGTCACAGGCTTCTGGTACGAGTTCTGGTGAGTCAACTGGTACAAGTGGTAACCGAGGCTCAGGGGCTCCTCGTAATCGTGTTGGGCAAATTTCACACAGTGTTGTTCTTGGAACATTTAATGTGGGGGAACAAGGTGAAGGAATTGTTCATGACCTCACTCGGGTTATTGGGCACGTTTTAAATTCTATTGGAAACGGTGGCCAGAGCACAATTAGTGGTCCTAATGCTATGCAAACTTCTTCAGTTCACCCAGGGAATGGAACTGAAGGAATGCATGCTGAAAATCAAAACCCAGCAGGAAATCAGGCACCATCTGGACATACATTTCATGGCCCGACATTCCAATCTGTCTCTCATGTTGTTCAGATTCCTGTGGCGGCAGGGGCTGTACCCCTTCCTTCTCTAAATGCACCAATTCCTAATTCGTTGAACACACTGTCTGAGTTTATGAATCGCATGGAACAGACACTAACACAAAATGGTTATCAATCAAATCTTTCATCAGCTAACCCTGGAGATCAGCAAGTGGAATTGCCTTCTAATGCACAAGGGTTGCCAACACTTGAAGCATTAAGCACTGTCTTGCATCACGCAGAACGGTTACTTGGTGGTCAAGCTGTTGCTGCACTATCTCATATTGCAGGGCGCTTGGAAAGAGAAGGAGCTTCTGCTGATATACCTGTAAGGGGCCAAATACAGTCAGAGTCAGTGCAAATAGGACTTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTTGGCCGAACAATGTTGACACTGCGAATGGGACAGTCTTCTGCAGAATCTGTCGTTAATGCTGGACCAGCAATTTACATTTCTCCATCAGGGCCAAATCCTATAATGGTGCAGCCTTTTCCACTTCAGACAAGCTCCCTCTTTGGTGGTCCAGTTCCCCCCTCAGCTCCTGCAACTTTAGGCACCATTGGTATTGGAAATGCTCCTAGGAACGTAAACATTCATATACATGCTGGTACCTCTCTTGCACCAATTGTTTCAGCAATTGGTTCTAGGGCAAATAATGGAGAGGGGACAAGAAGCGAACACCGAAATGATCCTGGCTCTGGTGATTCAGGTTCAACACGGGTATTACCTGTTAGAAATGTCATAGCAGCAACTATCCCATCACACCCTCCTGGTGTTGGAGTCTCTAGTAGCACACAAACTGGGTTTGGTGTTTCTACTTCACAGCGACCTTCTGATTCAGCTTCATTGTCATCTGTTTTTGCTGAAATGAATTCTCGCCTTAGAAACGTTGTCGGTAATATGCAAGGAGATAACACACTTCCATCAGGTCCAATGGAATCAAACAGCAGGTACTTATCTTCTGGATCTGAATCAAGACCGGCTACAGTAAATGAACAGCGAGATACCGTGGACGTGAATGGTATTGGGGCTTCCAGTGCTTCCTCAGTTGACTGCACTTCTGAAAGTGAAGTACAGAAGCTCCAAACTGAGGCAGTCCAAACCTCAAGTAATGATGATAGAGATGTTTTGGTTGACAAATTTGTTTCAAGTTCTTCCAACCAAGATTTACAAAGTTGTTCTAGTGGAGAAACAATAGTAAACCCAGATAAAGAACAAGATGTTCTGGCTGTAAGTGAAAGACAAAATGTAACTGAACCTGCCAAAGCTGCTCCGCTAGGATTGGGTGTGAGTGGTTTAGAGCGCAAGAGGCGAACTAAACTTCAAGCTCCTGTAAGTAAAGGTGCTGATGATGGATCATCCAGTTCTTCCGTTAGTCAAAATCAGCAAACCAGAACAGACAGTCAACATATATTGCAAACTCTTGCAAGTCATGGATCTATTTTGAATTCAAGAAATGCTAATGGGCCATCCCAGCGGTCCTTGCCCTCCAGTGATCGCCCGATTGATGTGGCTGGTTTAATGTCTCAGGCTTTACATAGTCCTGCTTTGAATGGCTTGTTGGAAGGAGTTTCACAGCAAACTGGAGTTGACTCACCCGATGGCTTGAGGAATATGTTGCAGCAGTTCACACAGAGCCCACAGCTGATGAACACAGTTAATCAAATTGTTCAACAGGTTGGCAGTCAGGATGTGGGGAATATGTTTGCTGGAACGGAAAGAGGGCAGGGTCGTGGTATTGACATTTCAAGGATGTTTCAACAGATGATGCCCATTGTATCTCAAGCCCTTGGTGGGGGGAATCCTTCCTCACTATTCTCTGCTGAAGAAGCAGAACCCCATGAACCCTACCATGATGGAACAGTTATCAGAGATGCATATTCTGATAGTCAAAGTGTACAGCTTGACCTTCAACCTCTGGCTGAGAGGATTGAGCACCTGGGTCCTTCTACAGATATTTTCCGTGCTGTAGCTGAAAATGCTGTCCAGCTATCTGACAGTGGAAGCACTTCTAATGGTCTTCTTGATGAGTTATGCAGCAATGAGAGTCTTGCCAGGGAATATGTAGATATGTTGCGATGCGATGTAAGTAAGTTGCTCGAGGGACATTCCGAGCCGGGCAAAGTCTAA	2817	0.4469	MAGQSSNEGSSTGKISAECSDSTVQLNIKTLESRIYSFQVDKNMPVSLFKEKIANEIGVPVNQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQSQSQASGTSSGESTGTSGNRGSGAPRNRVGQISHSVVLGTFNVGEQGEGIVHDLTRVIGHVLNSIGNGGQSTISGPNAMQTSSVHPGNGTEGMHAENQNPAGNQAPSGHTFHGPTFQSVSHVVQIPVAAGAVPLPSLNAPIPNSLNTLSEFMNRMEQTLTQNGYQSNLSSANPGDQQVELPSNAQGLPTLEALSTVLHHAERLLGGQAVAALSHIAGRLEREGASADIPVRGQIQSESVQIGLAMQHLGALLLELGRTMLTLRMGQSSAESVVNAGPAIYISPSGPNPIMVQPFPLQTSSLFGGPVPPSAPATLGTIGIGNAPRNVNIHIHAGTSLAPIVSAIGSRANNGEGTRSEHRNDPGSGDSGSTRVLPVRNVIAATIPSHPPGVGVSSSTQTGFGVSTSQRPSDSASLSSVFAEMNSRLRNVVGNMQGDNTLPSGPMESNSRYLSSGSESRPATVNEQRDTVDVNGIGASSASSVDCTSESEVQKLQTEAVQTSSNDDRDVLVDKFVSSSSNQDLQSCSSGETIVNPDKEQDVLAVSERQNVTEPAKAAPLGLGVSGLERKRRTKLQAPVSKGADDGSSSSSVSQNQQTRTDSQHILQTLASHGSILNSRNANGPSQRSLPSSDRPIDVAGLMSQALHSPALNGLLEGVSQQTGVDSPDGLRNMLQQFTQSPQLMNTVNQIVQQVGSQDVGNMFAGTERGQGRGIDISRMFQQMMPIVSQALGGGNPSSLFSAEEAEPHEPYHDGTVIRDAYSDSQSVQLDLQPLAERIEHLGPSTDIFRAVAENAVQLSDSGSTSNGLLDELCSNESLAREYVDMLRCDVSKLLEGHSEPGKV	938

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed6g1223	938	MobiDBLite	consensus disorder prediction	444	513	-	-
	Aed6g1223	938	MobiDBLite	consensus disorder prediction	677	696	-	-
	Aed6g1223	938	CDD	Ubl_ubiquitin_like	26	93	-	-
	Aed6g1223	938	PANTHER	OS07G0498800 PROTEIN	4	935	-	-
	Aed6g1223	938	MobiDBLite	consensus disorder prediction	92	128	-	-
	Aed6g1223	938	MobiDBLite	consensus disorder prediction	657	696	-	-
	Aed6g1223	938	PANTHER	LARGE PROLINE-RICH PROTEIN BAG6	4	935	-	-
	Aed6g1223	938	ProSiteProfiles	Ubiquitin domain profile.	24	99	IPR000626	GO:0005515
	Aed6g1223	938	MobiDBLite	consensus disorder prediction	486	513	-	-
	Aed6g1223	938	SMART	ubq_7	24	95	IPR000626	GO:0005515
	Aed6g1223	938	MobiDBLite	consensus disorder prediction	167	213	-	-
	Aed6g1223	938	MobiDBLite	consensus disorder prediction	709	730	-	-
	Aed6g1223	938	Pfam	Ubiquitin family	26	96	IPR000626	GO:0005515
	Aed6g1223	938	MobiDBLite	consensus disorder prediction	528	564	-	-
	Aed6g1223	938	SUPERFAMILY	Ubiquitin-like	19	98	IPR029071	-
	Aed6g1223	938	Gene3D	-	13	109	-	-
	Aed6g1223	938	MobiDBLite	consensus disorder prediction	709	727	-	-
	Aed6g1223	938	PRINTS	Ubiquitin signature	55	75	IPR019956	-
	Aed6g1223	938	PRINTS	Ubiquitin signature	76	97	IPR019956	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g1223	Aed-Chr6	16977113	16988014	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed6g1223	24	95	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	38.889	4.65e-11	59.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed6g1223	-		-	gmx:100783611	1588.55