Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1221 ATGGTGAAACCAACCATGGCTAGGGTTGATTCTTCTTCTTGTTGTAACAATAGTGATTCATTTTCCTCCAACAACATTGATGATTGCAAGATGTACAAAGGGGTGAGGAAGAGAAAATGGGGCAAATGGGTGTCCGAAATTAGGCTTCCCAACAGCCGCGACCGCATATGGTTGGGGTCCTATGACACCCAAGCAAAGGCGGCCAGAGCATTTGATGCTGCGCTTTACTACCTACGTGGCAAAAGTGCAAGCTTCAATTTTCCTGACACACCTCGACTCTTGGGAAATAATAACATGGTGATGTCACGTGACATACGACAACCTTTCTCCCACGAAGAGATTCAAGAGGTAGCCGTGAAATTTGCCAACAACCACGAGGAAGAAGAAAAAAGAAAAGAAAAAGAAAGGCCGTTGGAGTCACAAAGTGAAGAGTCCAATAAGTCCAACAATACAACAATAAGTGAGGTGAGCAACTTCCCTAGTATTTATGATATTGGTGGGATTCATCATCATCATGATGTGTTGCAAGTGGACCAACAACAAGGGGAATGTGACACCATGGATTGGACATTTTTGAACACGTTGGATGACTTGAATGGCTCAGATTTTGGCCTCTATTTGGAGCCAGACAAGATACACCACGGTGAGTTTTTGTGTCCCATGACTCAAGCTCCACTACTTTTTCATGGAGATGATGAAATTATTGAAGGTGGTGGTGATGATCATGATCAGGATGCTTTTTCTAACCATTCCTTCCTTTGGAGTTGGAACTTTTGA 777 0.4324 MVKPTMARVDSSSCCNNSDSFSSNNIDDCKMYKGVRKRKWGKWVSEIRLPNSRDRIWLGSYDTQAKAARAFDAALYYLRGKSASFNFPDTPRLLGNNNMVMSRDIRQPFSHEEIQEVAVKFANNHEEEEKRKEKERPLESQSEESNKSNNTTISEVSNFPSIYDIGGIHHHHDVLQVDQQQGECDTMDWTFLNTLDDLNGSDFGLYLEPDKIHHGEFLCPMTQAPLLFHGDDEIIEGGGDDHDQDAFSNHSFLWSWNF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1221 258 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 22 258 - -
Aed6g1221 258 CDD AP2 32 90 IPR001471 GO:0003700|GO:0006355
Aed6g1221 258 Pfam AP2 domain 32 80 IPR001471 GO:0003700|GO:0006355
Aed6g1221 258 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Aed6g1221 258 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Aed6g1221 258 MobiDBLite consensus disorder prediction 122 153 - -
Aed6g1221 258 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Aed6g1221 258 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Aed6g1221 258 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Aed6g1221 258 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF016 22 258 - -
Aed6g1221 258 MobiDBLite consensus disorder prediction 122 142 - -
Aed6g1221 258 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1221 Aed-Chr6 16950652 16951428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1221 32 128 AP2-EREBP Transcription Factor Family AT1G19210 64.286 1.24e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed6g1221 AP2 3.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1221 - - gmx:102665533 313.153