LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g1207	ATGGCAAACTACCACCTCAACAACGTCGAAAACGTCGTCCTCGGTCACCACCACCACCACCACCACCACCGTTCAAAGTCCGCCTCCTTCGCCGGCCACTTCCGCCTATGGAACGCAACCTCCCTCCGCCGCCTCATCTTCGACGCCGTCAGCTGCGGCGCGAGCTCCCGCTACGCCGAGAGATCCGACGACACGTCTTCCGAGAAACAGCAGAGGCAGCCGCAGCAAAAGTCAGAGAAGCCGAGCAATCACGCGAAGTCGGAGAAGCTCTCGGATCTGCTGAACATTGCGGAGGCAGAAGCTGAAGTGGAGACGAAGAAGAAGGAGGAGAAGCTCGAGGACCTGAAGCGCCTCGTGAAGGAGCTTCAGCAAAACGAAGAAGATAAAGAAGAAGAAGAAGAAGAGAAAAAAGAGGATCATTCAACCAAGAGAAAAGAAGCTGCGTCAAAAGTGAGGTTACTAGCGAAAGAGGATTTGGAAGTAAGAGGAACTCTCGCTATGCTTGGAGCCATTCCTCCTCTCGTCACAATGCTCGATGAAACCGAACAAAACGACGTCGATTCACTCGTCGGTTCGCTCTACGCTCTGCTCAACCTTGGAATCGGAAACGACGCGAATAAAGCAGCTATTGTGAAAGTTGGGTCTGTCGAAAATATGCTCAAGTTGATTGAATCTCCAGATGGTCTTGATTCTGCGGTTTCTGAAGCAATTGTTGCGAATTTCCTTGGATTAAGTGCTTTGGATTCGAACAAGCCCATAATCGGGTCTTCGGCTTCAATTTCTTTCTTAGTTAGAATCCTTCAGAGTTCAGATGACAAGAGTAGTAGTCCCCAAGCCAAGCAAGATGCTCTCCGAGCACTGTATAATCTTTCAATCTTCCCAGCCAATGTTGCATTCATTCTGGACACCGATTTGGTTGTGTTTCTGATGAACTCAATAGGGGATATGGAGGTAACAGAAAGAGCCCTTGCAACTCTCAGCAACATAGTCTCGACCCGAGAGGGTAGAAAGGTGATAAGCGCTGTGCCAGATTCTATCCCAATCCTGGTTGATGTGTTGAATTGGACGGATTCGCCCGAATGCCAGGAGAAGGCATCGTACATTTTGATGGTTATGGCACACAAGTCCTATGGTGACAAGCAGGCCATGATTGAGGCAGGGATTGCTACATCACTGCTTGAGTTGTCCCTTTTGGGTTCCACATTGGCTCAGAAAAGGGCCTCGAGGATACTGGAGATTCTGAGGGTGGACAAAGGGAAGCAGGTTTCTGGGAGCTATGGCTCGGGTGTGGCTGTCTCTGCTCCAATATGTGGCTCTTCGTCTGCAAAGCCGGACGGAGGAGGAGGAAGAGAGTGTTACGAGGAGGACGAGGAGATGATGAGTGAGGAGAAGAGAGCAGTGAAGGAATTAGTCCAGCAGAGTTTGCAGAACAACATGAGGAAAATTGTAAAGAGGGCCAACTTGCCTCAAGATATCGTGCCATCAGATCATTTTAAGTCACTCACTTCAAGTTCTACTTCAAAGAGCCTGCCATTCTGA	1539	0.4958	MANYHLNNVENVVLGHHHHHHHHRSKSASFAGHFRLWNATSLRRLIFDAVSCGASSRYAERSDDTSSEKQQRQPQQKSEKPSNHAKSEKLSDLLNIAEAEAEVETKKKEEKLEDLKRLVKELQQNEEDKEEEEEEKKEDHSTKRKEAASKVRLLAKEDLEVRGTLAMLGAIPPLVTMLDETEQNDVDSLVGSLYALLNLGIGNDANKAAIVKVGSVENMLKLIESPDGLDSAVSEAIVANFLGLSALDSNKPIIGSSASISFLVRILQSSDDKSSSPQAKQDALRALYNLSIFPANVAFILDTDLVVFLMNSIGDMEVTERALATLSNIVSTREGRKVISAVPDSIPILVDVLNWTDSPECQEKASYILMVMAHKSYGDKQAMIEAGIATSLLELSLLGSTLAQKRASRILEILRVDKGKQVSGSYGSGVAVSAPICGSSSAKPDGGGGRECYEEDEEMMSEEKRAVKELVQQSLQNNMRKIVKRANLPQDIVPSDHFKSLTSSSTSKSLPF	512

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed6g1207	512	Coils	Coil	453	473	-	-
	Aed6g1207	512	Gene3D	-	93	273	IPR011989	-
	Aed6g1207	512	MobiDBLite	consensus disorder prediction	57	91	-	-
	Aed6g1207	512	Gene3D	-	274	425	IPR011989	-
	Aed6g1207	512	MobiDBLite	consensus disorder prediction	123	147	-	-
	Aed6g1207	512	SUPERFAMILY	ARM repeat	110	415	IPR016024	-
	Aed6g1207	512	MobiDBLite	consensus disorder prediction	61	91	-	-
	Aed6g1207	512	PANTHER	ARM REPEAT SUPERFAMILY PROTEIN	1	512	-	-
	Aed6g1207	512	PANTHER	ARM REPEAT SUPERFAMILY PROTEIN	1	512	-	-
	Aed6g1207	512	Coils	Coil	94	150	-	-
	Aed6g1207	512	SMART	arm_5	293	331	IPR000225	GO:0005515
	Aed6g1207	512	SMART	arm_5	203	246	IPR000225	GO:0005515
	Aed6g1207	512	SMART	arm_5	247	292	IPR000225	GO:0005515
	Aed6g1207	512	SMART	arm_5	158	201	IPR000225	GO:0005515
	Aed6g1207	512	SMART	arm_5	335	374	IPR000225	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g1207	Aed-Chr6	16820505	16824356	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed6g1207	137	418	U-box Gene Family	AT1G67530	30.070	3.12e-28	117

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed6g1207	-		-	gmx:100788575	687.567

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed6g1207	6	16820505	16824356	Aed4g1744	4	21797304	21800083	PCT