Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1204 ATGAGTAGTCCAATTCGCCTTCGTGCAAGATCAAATAGAAAACTCCTTTATAATATTGATTTGTCAGATGACAATTCAGATTTTTGGTCCAATAAAAGTGGACAACATAAGAAAAAGAAGAATGATAGTATTGAGATGGAGCTTCGTCCAAGGTCCAGTCGCACAAAGCCAAAAAAATATATTATAGATGATTCATCTGATTCATCTGATTCATCTGATACTTTGTCCAGCAAACATAGCGAATCTCAGAAAAAGTATGAGAAAATTGAGGGAATGGATACTGTTAGCCCACTGAGTAATGTTGATAAGATATTAGATTGTGAGATGCCTTCCGAGGTAGCTTGTGAAAGTGATGGCTGTGATGCAACAAAACTGGGGTCAAAGCAAAATTTGGTCAAAAAATATCTTGTCAAGGTCCCAGAGGAAGAGTTTATGAAAGCTTTCAAGAATCATCCTGGTCTAAAGACCAAAATAAGAAACTTCCATCAAGCATCAGCCAAAAATCTCGATGAAGATTTTGTTGCCATTCGACCTGAATGGACTACTGTTGATCGAATACTTGCTTGCAGGGGTGATGATGATAATAAGGAGTATCTTGTGAAGTGGAAAGAGCTTCCATATGATGAATGCCATTGGGAGCTCAAGTCAGATATTTCTGCATTTAAAAAAGAAATAGAAAGGTTTAACACATTTCAATCTAGATCAAGGACAATCTTGTCTAGCAAGAACAAAAGTAGTGTTAAGGATGGTGCTGAATTGAATAAGCAGCAGAAAGAATTTCTACAGTACGAAGATAGCCCTCAATTTCTTTCAGGGGGTGCACTGCATTCATATCAACTTGAAGGATTGAACTTCTTGCGATTCTCCTGGGCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATACAGAGTATTGCTTTCCTAGCATCCCTTTTTGAAGAGAATGTTTCTCCACATCTGGTGGTTGCTCCACTTTCAACATTGCGAAACTGGGAACGCGAATTTGCAACTTGGGCACCTCAAATGAATGTTGTTATGTATTTTGGATCTTCCAAAGCTCGTGCTTTTATTAGAGAGCATGAGTTTTACTTTCCAAAGAATCAAAAGAGGAACAAGAAAAAGACAATTAACGAAAGCAAACAAGAAAGGATGAAGTTTGATGTCCTTTTGACATCATATGAGATGATAAATTCCGATACATCATCATTGAAACCTATAAAGTGGGAGTGCATGATAATTGATGAAGCTCACCGTCTCAAAAACAAGGAATCTAAATTATTTGCTTCATTGAAGCAATATTCTAGCAAACATCGTGTGCTTTTAACAGGAACTCCTCTCCAGAACAATCTGGACGAATTGTTTATGCTTATGCATTTCCTTGATGCTGGAAAGTTTGGAAGTCTAGAGGAGTTCCAAGAAGAGTTCGAGGACATAAATAGAGAGGAGCAAGTATTGAGGCTACATAAAATGCTTGCTCCACATCTCTTGAGAAGAATGAAGAAAGATGTCATGAAGGAACTACCTGCGAAAAAGGAGCTTATTTTGCCAAACAAAGAATACTACAAGGCAATCTTGACCCGTAATTATCAGATATTAACCCGCCAAGGTGGTGCACAAATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATCTCTATATGTTACAAGGATTTCAACTGGATCCTAATGATGCAAAAGAACCATACAAGCAATTGCTTGAATCATCTGGGAAGTTGCAGTTGTTGGATAAGATGATGGTGAGGCTTAAAGAGCAAGGACATAGAGTTCTTATATATTCCCAATTCCAGAAAATGCTGGATTTGCTTGAAGATTACTGTTTTTACAAGCAATGGCAGTATGAGAGGATAGATGGCAAGATTGGAGGAGCTGAAAGACAAGTACGGGTAGATCGGTTTAATGCTAAAAATTCTTCAAGATTTTGTTTTCTGCTTTCTACTAGGGCTGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCCAGAGCTCATCGACTTGGACAAACTAACAAGGCTTATAACGAGGGGAACAATTGAAGAAAGGATGATTCACATTACAAAGAAGAAAATGGTGTTAGAGCACCTGGTTGTAGGGAGGAGCCTAAAGGCTCAAAACATTAACCAGGAAGAGTTAGATGATATCGTAAGGTATGGCTCAAAGGAGTTGTTTGCTGATGAGAATGATGAAGTGGGAAAATCTCGCCAAATTCATTATGATGATGAAGCAATAGATAGATTGCTGGATCGTGATCAAGTTGGAGATGAAAAGGCTGCTGTGGACGGTGAAGACGAAGATGGATTTTTGAAGGCCTTTAAGGTGGCAAATTTTGAGTATATCGAAGACGTTGAGCCAGCAGAGGAGGTGGCACAAGATAGAGCGAAGGAGAATCAATCCTCTGCGACTAGTTCAAAGAGAACAAATTACTGGGAAGAGTTGTTGAAAGACAGATATGAAGAGCATAAAGTTGAAGATTCAAAAGCCTTGGGAAAAGGCAAGAGAAACCGCAATAAATGGCTGGGGGGTGGTTTTCATGCAGATATCACGAGGTCACATCCTGTAATGGCAGGTGAAGGAAAATCTCTGAAAGTTCTTGGTTTTACTCAAAATCAAAGGTCTTCATTTGTTCAAATTATGATGAGGTTTGGTGTTGGTGATTTTGATTGGAAAGAGTTTAATTCCCGCATAAAACAGAAGAGTTCTCAAGAAATCATGGAGTATGGACAACTTTTCTTGTCTCATATTGCAGAAGATATAACTGATTCCCCTAAATTCTTAGATGGTGTTCCAAAAGAAGGACTTCGAATACAGGATGTACTTGTAAGGATTGCAGTTATGCTCTTGATAAGGGACAAAGTGAAGTTTGCATCAGAAAATCCTGGAACTCAGCTTTTTTCAGATGATATCTTATTACGCTATCCTGGTTTGAAAGTTGGAAAATCGTGGAAGGAGGAGCATGATTTATTGTTACTGCATGCTGTGCTGAAGCATGGCTATGGAAGGTGGAATGATATTGTTAATGATGACGATCTGAAGATTCAGAAGGTCATCTGTCAGGAGTTGAATATTCCAATTAAAGATTTACGACTTCAAGGACAAGTTTCCACTCAAGGGTACAATAGTCCAAATATGACCAATCAAGCTAGTGACATCGCTGCTGAAGGTGCACATGTTTCTGGTGATGCTGGGAACCAAGCAGAGTTATCTCAACAGTTTATTGACATGCAGAAAAAACAGGTTGAGTTTATGAAGAAAAGGTTCCATCTCTTGGAAAAAGGTTTCAACGCTGAGTACCAGAAAGAATACTTTAGTGGTGTGAAAGCAAATGAGGTGGAAAATGACGAACCTAAAGCTGAACCCGAAGCTACAACTGTGCCTCAAGTCAAAGCAATAGGTGTAGAAGAAATCTCTATGTCTGCATGTGATTATGATCCTGATCGATTGCAACTAGTTTCTCTTTACAACGAGATGTGCAGAACTGTGAATGAAAACGCCATGGATTTAATTCAAAAGTCTTCGGCAGGAGAACTGACAGAAGCCGATGTCATTAAGAACTTCCATCCACTGGAGATCATTTCTGCGGATGTCAACAGAATTCTAAATCAACCGAATTCTGACAAAAAGTCGAATACTTCATCACAGACTGAAGATGTGGTAATGGAGTCTGAACCTAAAAAAGAAAGTAATCAGGTTACCAAGAGTTCCAAAGACATGGGAACTGATGTCGAAAATGGATGCATCAGAATTAAGGATGATACTAAGAAAGGCAAAAAACAAGTGATAATTTTTTTAGAGGACTAA 3849 0.3863 MSSPIRLRARSNRKLLYNIDLSDDNSDFWSNKSGQHKKKKNDSIEMELRPRSSRTKPKKYIIDDSSDSSDSSDTLSSKHSESQKKYEKIEGMDTVSPLSNVDKILDCEMPSEVACESDGCDATKLGSKQNLVKKYLVKVPEEEFMKAFKNHPGLKTKIRNFHQASAKNLDEDFVAIRPEWTTVDRILACRGDDDNKEYLVKWKELPYDECHWELKSDISAFKKEIERFNTFQSRSRTILSSKNKSSVKDGAELNKQQKEFLQYEDSPQFLSGGALHSYQLEGLNFLRFSWAKQTHVILADEMGLGKTIQSIAFLASLFEENVSPHLVVAPLSTLRNWEREFATWAPQMNVVMYFGSSKARAFIREHEFYFPKNQKRNKKKTINESKQERMKFDVLLTSYEMINSDTSSLKPIKWECMIIDEAHRLKNKESKLFASLKQYSSKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFEDINREEQVLRLHKMLAPHLLRRMKKDVMKELPAKKELILPNKEYYKAILTRNYQILTRQGGAQISLINVVMELRKLCCHLYMLQGFQLDPNDAKEPYKQLLESSGKLQLLDKMMVRLKEQGHRVLIYSQFQKMLDLLEDYCFYKQWQYERIDGKIGGAERQVRVDRFNAKNSSRFCFLLSTRAVIGILMLIYKLWPELIDLDKLTRLITRGTIEERMIHITKKKMVLEHLVVGRSLKAQNINQEELDDIVRYGSKELFADENDEVGKSRQIHYDDEAIDRLLDRDQVGDEKAAVDGEDEDGFLKAFKVANFEYIEDVEPAEEVAQDRAKENQSSATSSKRTNYWEELLKDRYEEHKVEDSKALGKGKRNRNKWLGGGFHADITRSHPVMAGEGKSLKVLGFTQNQRSSFVQIMMRFGVGDFDWKEFNSRIKQKSSQEIMEYGQLFLSHIAEDITDSPKFLDGVPKEGLRIQDVLVRIAVMLLIRDKVKFASENPGTQLFSDDILLRYPGLKVGKSWKEEHDLLLLHAVLKHGYGRWNDIVNDDDLKIQKVICQELNIPIKDLRLQGQVSTQGYNSPNMTNQASDIAAEGAHVSGDAGNQAELSQQFIDMQKKQVEFMKKRFHLLEKGFNAEYQKEYFSGVKANEVENDEPKAEPEATTVPQVKAIGVEEISMSACDYDPDRLQLVSLYNEMCRTVNENAMDLIQKSSAGELTEADVIKNFHPLEIISADVNRILNQPNSDKKSNTSSQTEDVVMESEPKKESNQVTKSSKDMGTDVENGCIRIKDDTKKGKKQVIIFLED 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1204 1282 Pfam CHD subfamily II, DUF1087 802 853 IPR009463 -
Aed6g1204 1282 Gene3D - 170 230 - -
Aed6g1204 1282 Pfam CHD subfamily II, SANT-like domain 863 983 IPR009462 GO:0003677|GO:0006338
Aed6g1204 1282 MobiDBLite consensus disorder prediction 77 91 - -
Aed6g1204 1282 MobiDBLite consensus disorder prediction 1217 1260 - -
Aed6g1204 1282 Gene3D - 514 666 IPR027417 -
Aed6g1204 1282 Pfam SNF2-related domain 295 564 IPR000330 GO:0005524|GO:0140658
Aed6g1204 1282 CDD CD2_tandem 179 228 - -
Aed6g1204 1282 SMART ultradead3 271 480 IPR014001 -
Aed6g1204 1282 CDD SF2_C_SNF 586 665 - -
Aed6g1204 1282 Coils Coil 474 494 - -
Aed6g1204 1282 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 4 854 - -
Aed6g1204 1282 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 287 469 IPR014001 -
Aed6g1204 1282 SUPERFAMILY Chromo domain-like 168 233 IPR016197 -
Aed6g1204 1282 SMART DUF1087_2 800 866 IPR009463 -
Aed6g1204 1282 Gene3D - 685 780 IPR027417 -
Aed6g1204 1282 MobiDBLite consensus disorder prediction 30 66 - -
Aed6g1204 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 504 IPR027417 -
Aed6g1204 1282 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 4 854 - -
Aed6g1204 1282 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 862 971 - -
Aed6g1204 1282 MobiDBLite consensus disorder prediction 22 91 - -
Aed6g1204 1282 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 591 775 IPR001650 -
Aed6g1204 1282 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 862 971 - -
Aed6g1204 1282 SMART DUF1086_2 831 986 IPR009462 GO:0003677|GO:0006338
Aed6g1204 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 720 IPR027417 -
Aed6g1204 1282 ProSiteProfiles Chromo and chromo shadow domain profile. 181 243 IPR000953 -
Aed6g1204 1282 Gene3D - 953 1117 - -
Aed6g1204 1282 Pfam CHDCT2 (NUC038) domain 997 1029 IPR012957 -
Aed6g1204 1282 SMART chromo_7 179 233 IPR000953 -
Aed6g1204 1282 Pfam Chromo (CHRromatin Organisation MOdifier) domain 182 229 IPR023780 -
Aed6g1204 1282 MobiDBLite consensus disorder prediction 1217 1234 - -
Aed6g1204 1282 Gene3D - 267 513 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1204 Aed-Chr6 16785979 16802483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1204 297 594 RAD5 or RAD16-like Gene Family AT5G22750 24.734 6.95e-18 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed6g1204 SNF2_N 3.3e-58 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1204 K11643 - gmx:100779829 1648.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1204 6 16785979 16802483 Aed4g1748 4 21824245 21840946 PCT