Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1202 ATGAAAGTAGTGGTGGAGAATCATAGAATGGATGATCTCAGAGACCAGTTTCCTGTAGGAATGCGTGTTCTTGCTGTTGATGATGACTCAACATGTCTCTTGGTTCTGGAGACTCTGCTTCGAAGTGATGTCCACATGCCAGACATGGACGGATTTAAGCTGCTTGAGCTTGTGGGGCTTGAGATGGACCTACCTAACAAAACCAGCGACGACCATGACAAACCTAAAGCTGATAGTTGCAATGGAAGAGGATCAGCAACATCAGGAAATTCAGATCAAAATGGAAAGCCTTCCAGAAAGAGGAAGGATCAGGATGATTATGATGATGAGGAGGAGGAGAATGAGAATGATGACAATGAGGACCCATCAGCTCCGAAGAAACCTCGAGTGGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTTCTGCTGTTAATCAACTAGGCATTGACAAGGCTGTACCCAAAAAGATTCTTGATTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGCTAGTATGGTGGCAGCCTTAGGCCCTGCAGATTCATCCTATTTGAGAATGGCTTCTCTGAGTGGAGTTGGGCATATGCAGAAATTCACTGGTTCTCAACAGTTTCACAACAATTCTTTCAGACCCTTTCCACCTAGTGGAATGATTGGTAGATTGAACACTTCTGTTGGTCTGAACATGCATGGATTGTCCTCTTCAGAACCTCTTCAGATGAGTCATTCACAAAATGGTATCCAGGGAAGGCCAATGCCTATTGGTCTAGATCAATTTCAACATAATAAGGGTGCTAGTGTTGGTGTTGGTCCTATTCAAAACATGTCCCCTCTTATTGATGCTAGAACAACTTTTGCCATGTCAAATAAAATCACAAATCAAACACCAAAAGGTTGCTCTCCGGTTTTCGACATCTCAAGCAATGCCTTGGTATTGAAATCAGACAGAGAAAACACACAAGGGAGTGGAGTATATGAGAATTTAACTTCAGTAGCCTCTCAGCATTCACAGTTTTCTCTCCCTTTCTTGGATCATCATGGTAGGTGTAATGATATTTGGTCAAGTCCAAATGAAACTTTGCAAGGGGGGAATCTGAGTGGTGCTTCATCCATTACTACAATGTCTAATCAATCCCATGATTCACTGACAGATATGCACTCCCAAGGACTCATTTTTGCAAATAATAATAATCCAGGACAAATGAGCAATAATTTGCCATTTCAAGGGTGGGATGACCATAATCATGATAGTAGTTACCATTCAAATGTTGATGGTAACTCAATAGACTCTCTGATTGATCCTGAAGGCCATCATACTTCTATTAACTCAACATACAACAGAAACCTGGACTTCAATTTTTGTGATCCCTTACTGATGAAGCATGATGGAATTATGGGATTGAGTGAAGAAAACTCATTGAAACAACAACAGGTGTACCTCATGAACCAGCAGAAGTCTCAAAACAGTCGCGCTGCTAATAATCTTGGTTCACTGGAAGACTTTGTCAGCTCAATGATGAAACAGGGCATTACTCTTAGCAAGGGCTTTCTCAAATTTGTGAAAATGCGTTGTTTATGGATGAGGGCCCTCTAG 1596 0.4167 MKVVVENHRMDDLRDQFPVGMRVLAVDDDSTCLLVLETLLRSDVHMPDMDGFKLLELVGLEMDLPNKTSDDHDKPKADSCNGRGSATSGNSDQNGKPSRKRKDQDDYDDEEEENENDDNEDPSAPKKPRVVWSVELHRKFVSAVNQLGIDKAVPKKILDLMNVEKLTRENASMVAALGPADSSYLRMASLSGVGHMQKFTGSQQFHNNSFRPFPPSGMIGRLNTSVGLNMHGLSSSEPLQMSHSQNGIQGRPMPIGLDQFQHNKGASVGVGPIQNMSPLIDARTTFAMSNKITNQTPKGCSPVFDISSNALVLKSDRENTQGSGVYENLTSVASQHSQFSLPFLDHHGRCNDIWSSPNETLQGGNLSGASSITTMSNQSHDSLTDMHSQGLIFANNNNPGQMSNNLPFQGWDDHNHDSSYHSNVDGNSIDSLIDPEGHHTSINSTYNRNLDFNFCDPLLMKHDGIMGLSEENSLKQQQVYLMNQQKSQNSRAANNLGSLEDFVSSMMKQGITLSKGFLKFVKMRCLWMRAL 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1202 531 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 127 170 IPR006447 GO:0003677
Aed6g1202 531 Gene3D - 124 173 - -
Aed6g1202 531 Coils Coil 100 120 - -
Aed6g1202 531 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 41 - -
Aed6g1202 531 PANTHER TWO-COMPONENT RESPONSE REGULATOR 40 67 - -
Aed6g1202 531 PANTHER TWO-COMPONENT RESPONSE REGULATOR 77 505 - -
Aed6g1202 531 MobiDBLite consensus disorder prediction 66 127 - -
Aed6g1202 531 PANTHER TWO-COMPONENT RESPONSE REGULATOR 40 67 IPR045279 GO:0009736
Aed6g1202 531 SUPERFAMILY CheY-like 20 57 IPR011006 -
Aed6g1202 531 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 41 IPR045279 GO:0009736
Aed6g1202 531 PANTHER TWO-COMPONENT RESPONSE REGULATOR 77 505 IPR045279 GO:0009736
Aed6g1202 531 SUPERFAMILY Homeodomain-like 125 170 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1202 Aed-Chr6 16770313 16775690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1202 15 267 Response Regulator Gene Family AT2G25180 40.489 2.80e-58 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed6g1202 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1202 - K14491 gmx:100777171 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1202 6 16770313 16775690 Aed4g1749 4 21841525 21846271 PCT