Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1193 ATGCCAATGGACTATAGCCCTAGCAAGGACATCAACATTGCCTTTTATAACATTCTCGTTGTTAAGTGGTTAAGGGATTTGGGTGTAGGGAAGATCGGAAGGCTAGTGTCTATGATTGGAGTGGTGACTAGGACAAGCATGAGGGTCAGAATTCAGGAGACATCCAAAGAGATACTTGCAGGGTCTCCTCTTAGGTTATTGGATGTTATTCTTCGTGATGAATTCGTGGAGCAGGCTAGGGCTGGTGACACAGTGGTTTTCACAGGCATAGTTTCAAGATTTGTGTATACATATGGGAAATCATCATCTCCTGTTGGTTTGACTGGAATTATTGCTAAGGAACCAATAACTGAGGAGTTTTGTATTGAGGCTGGTGCTTTGATGCTTGCGGACAATGGCATTTGGTGCATTGAAGAATTTGACAAGATGGACATTAGTGATCAGGTTGCAATTCATGAGGCAATGGAACATCAAACTATTAATATCACAAAAGCAGATATACAAGCAACACTTAATGCTCGGACTTCCATTCTTGCTGTTGTCAATCCTGCTAGGGGACGTTATGATGAATCTAAACCACTTGAGTACAATGTGGCTCTTTCACCAACTATACTTTTAAGGTTTGATCTTGTATATGTTATGATTGATGACTCAGACGATAATACAAATTACCGCATAACTAATCATATTCTCATGCCAGATACCAGAAGAGTACTGGTAGACTTTTATGTTGCTCTCCGTAGAGGTAATAGAAATCCTAGGAGTAGGATTGCATATCAAATGACAGTTAGGCAGTTGGAGGCATTTATTAGGCTATTGGAGGCCATTGCACGGTGTCATTTGGACAATGAGGTACAACCTTACCATGTTTGTTTAGTAGTAAGATTGCTAAAAACTTCCATAATAAGTACTGTGGAGTCCAGTGAGATTGATCTCTCTGAGTTTCAAAAAGGTAGAGGTGGTGTAGATGCAGCTTAA 978 0.4029 MPMDYSPSKDINIAFYNILVVKWLRDLGVGKIGRLVSMIGVVTRTSMRVRIQETSKEILAGSPLRLLDVILRDEFVEQARAGDTVVFTGIVSRFVYTYGKSSSPVGLTGIIAKEPITEEFCIEAGALMLADNGIWCIEEFDKMDISDQVAIHEAMEHQTINITKADIQATLNARTSILAVVNPARGRYDESKPLEYNVALSPTILLRFDLVYVMIDDSDDNTNYRITNHILMPDTRRVLVDFYVALRRGNRNPRSRIAYQMTVRQLEAFIRLLEAIARCHLDNEVQPYHVCLVVRLLKTSIISTVESSEIDLSEFQKGRGGVDAA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1193 325 PANTHER DNA REPLICATION LICENSING FACTOR MCM6 90 307 - -
Aed6g1193 325 PANTHER DNA REPLICATION LICENSING FACTOR MCM6 7 46 - -
Aed6g1193 325 ProSiteProfiles MCM family domain profile. 90 230 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aed6g1193 325 Pfam MCM AAA-lid domain 231 301 IPR041562 -
Aed6g1193 325 PRINTS Mini-chromosome maintenance (MCM) protein family signature 153 166 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aed6g1193 325 PRINTS Mini-chromosome maintenance (MCM) protein family signature 125 139 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aed6g1193 325 PRINTS Mini-chromosome maintenance (MCM) protein family signature 204 212 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aed6g1193 325 PRINTS Mini-chromosome maintenance (MCM) protein family signature 177 189 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aed6g1193 325 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 90 307 IPR031327 GO:0003677|GO:0005524|GO:0032508
Aed6g1193 325 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 7 46 IPR031327 GO:0003677|GO:0005524|GO:0032508
Aed6g1193 325 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 48 90 IPR031327 GO:0003677|GO:0005524|GO:0032508
Aed6g1193 325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 303 IPR027417 -
Aed6g1193 325 Gene3D - 235 306 IPR027417 -
Aed6g1193 325 Gene3D - 85 234 IPR027417 -
Aed6g1193 325 Pfam MCM P-loop domain 90 231 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aed6g1193 325 SMART mcm 20 302 IPR031327 GO:0003677|GO:0005524|GO:0032508
Aed6g1193 325 PANTHER DNA REPLICATION LICENSING FACTOR MCM6 48 90 - -
Aed6g1193 325 Pfam MCM OB domain 48 92 IPR033762 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1193 Aed-Chr6 16703296 16704975 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1193 47 91 Core DNA Replication Machinery Family AT5G44635 77.778 4.39e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1193 K02542 - gmx:100794021 323.939