Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1192 ATGGCCAGACCGCAACAGCGTTACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATTCTGAAGACAAGGATATGGCTTGGTACATTTGAAACAGCAGAGGATGCAGCAAGAGCCTATGATGAAGCAGCAAGGCTAATGTGTGGTGCAAGGGCAAGGACAAACTTCCCTTTCAACCCAAACAATGTGAATGTGTCACACTCATCTTCTAATTCAAAGCATCTCTCAGCAACTTTGACTGCAAAGCTTCACAGGTGCTACATGGCCTCTTTGCAAATGACAAGGCAGGCTCTGGCATCTGATCAGTCTCAGATTAGAACACCAGTACCCTCAGTGCCAAATGCAACAACAACCACAGCAGTTAGCAACTTCAGTGTGAAGAAGAAGAAGAGTGATGAGAAAACTCATCATGAGGTTGTGGAAAATGTTCCTCTGCAGCAGTTCAAGCCTCTTGAGGAGGATCACATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGCTCTATTGAACTCTGCTCTGTCTCTAATTGA 552 0.4638 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNNVNVSHSSSNSKHLSATLTAKLHRCYMASLQMTRQALASDQSQIRTPVPSVPNATTTTAVSNFSVKKKKSDEKTHHEVVENVPLQQFKPLEEDHIEQMIEELLDYGSIELCSVSN 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1192 183 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Aed6g1192 183 CDD AP2 6 61 IPR001471 GO:0003700|GO:0006355
Aed6g1192 183 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Aed6g1192 183 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Aed6g1192 183 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 180 - -
Aed6g1192 183 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Aed6g1192 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 180 - -
Aed6g1192 183 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Aed6g1192 183 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Aed6g1192 183 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1192 Aed-Chr6 16696473 16697392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1192 1 181 AP2-EREBP Transcription Factor Family AT5G25190 66.667 4.28e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aed6g1192 AP2 5.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1192 - - gmx:100785918 234.187