Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1184 ATGGCGTACCATAACCACAACCTTTCACAACAAGACCTTCCACTCCACCATTTCCCGAACCAATCCATGTTACCAGACCAACAGCTTCCGTCCTCACCCGACCCTAACTCCAAACCTCCCTCCGATCCACACCCTCTCCAAACCGCGCCCAATTGGCTCAACGACGCACTCCTCCGCACTCACTACGCTGACACCACCACCAACGACACCGCCGCCGCCAACAACACCACCGTCAACGGTTCCAATAACTTCCTGAACCTCAACCCCGGCGCCTCCGACGCGCAGTGGCTGGCGCGGCCGGCGCTCCACCGCCACCCCGGCGAGGTCATCGACGCCGGCGCCGGCGAGTCCCTCGTGGACCACGCCGATTTGAAGGGCGACGGAGGCGGCGGAGGTGGAGGCGACGCCGTGAACTGGCAGATTGGGCGGTGGAAGGCGGAGGTTCTGTCGCACCCGCTGTATGAACAGCTGCTGTCGGCACACGTGGCGTGCCTCCGAATCGCCACGCCGGTGGACCAGTTGCCGAGGATCGACGCGCAGTTGGCGCAGTCGCAGAATGTGGTCGCGAAATACGCAGCATTCGGAGGACACAACAACAACAACATCGTCGCCGACGAAAAAGAACTCGACCAGTTCATGTCGCACTATGTTTTGTTGCTGTGTTCCTTCAAAGAACAGTTGCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAATCCTTGCAGAGTCTTACAGGAGTTTCGCCTGGAGAAGGCACAGGGGCAACAATGTCTGATGATGAAGATGAACAAGTAGACAGTGATGCCAATCTCTTTGATAGTAGCATGGATGGGGCAGATAGCATGGGATTTGGCCTTCCTACAGAGAGTGAGAGGTCCCTCATGGAGCGAGTAAGACATGAATTGAAGCATGAACTGAAACAGGGTTATAAGGAGAAAATTGTAGACATAAGAGAGGAGATTATGCGCAAGAGACGAGCTGGAAAACTTCCTGGTGACACAACTTCTCTTCTGAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACCGAGGAGGATAAGGCAAGGTTGGTTCAGGAAACTGGATTGCAATTAAAGCAGATCAATAACTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACCTCCACTGTCTTGAAGAGCAAGCGCAAAAGAAGCAATGCAGGTGATAACTGA 1239 0.54 MAYHNHNLSQQDLPLHHFPNQSMLPDQQLPSSPDPNSKPPSDPHPLQTAPNWLNDALLRTHYADTTTNDTAAANNTTVNGSNNFLNLNPGASDAQWLARPALHRHPGEVIDAGAGESLVDHADLKGDGGGGGGGDAVNWQIGRWKAEVLSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYAAFGGHNNNNIVADEKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDSSMDGADSMGFGLPTESERSLMERVRHELKHELKQGYKEKIVDIREEIMRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRSNAGDN 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1184 412 Pfam Homeobox KN domain 349 388 IPR008422 GO:0003677|GO:0006355
Aed6g1184 412 Coils Coil 315 335 - -
Aed6g1184 412 Pfam KNOX2 domain 204 253 IPR005541 GO:0003677|GO:0005634
Aed6g1184 412 SMART KNOX1_2 142 186 IPR005540 GO:0003677|GO:0005634
Aed6g1184 412 Pfam ELK domain 309 330 IPR005539 GO:0003677
Aed6g1184 412 SMART HOX_1 331 396 IPR001356 GO:0003677
Aed6g1184 412 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 37 408 - -
Aed6g1184 412 SUPERFAMILY Homeodomain-like 331 394 IPR009057 -
Aed6g1184 412 MobiDBLite consensus disorder prediction 32 46 - -
Aed6g1184 412 MobiDBLite consensus disorder prediction 1 50 - -
Aed6g1184 412 MobiDBLite consensus disorder prediction 392 412 - -
Aed6g1184 412 ProSiteProfiles ELK domain profile. 309 329 IPR005539 GO:0003677
Aed6g1184 412 Pfam KNOX1 domain 145 185 IPR005540 GO:0003677|GO:0005634
Aed6g1184 412 ProSiteProfiles 'Homeobox' domain profile. 329 392 IPR001356 GO:0003677
Aed6g1184 412 SMART ELK_2 309 330 IPR005539 GO:0003677
Aed6g1184 412 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 37 408 - -
Aed6g1184 412 MobiDBLite consensus disorder prediction 1 31 - -
Aed6g1184 412 CDD homeodomain 332 393 IPR001356 GO:0003677
Aed6g1184 412 Gene3D - 327 403 - -
Aed6g1184 412 SMART KNOX2_2 198 254 IPR005541 GO:0003677|GO:0005634
Aed6g1184 412 MobiDBLite consensus disorder prediction 253 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1184 Aed-Chr6 16609338 16614906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1184 1 406 Homeobox Transcription Factor Family AT5G25220 64.270 7.93e-180 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aed6g1184 KNOX2 2.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1184 - - gmx:100812596 679.863