Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1180 ATGAATGCAAGCTATTGTCTTTATCCACAAGTTGCTCATGGTTTAATATCAAAATTTGTTGGAGGAAAGCAAGGCCCTGTTTCAAGCTTTCCTCACTCAACTTACCATGGATCAGGCCAAGCCAATACTGGAAATTCATTTCTGGGTCTCCTTCATGGTCCTCCATCCTTGTTACAGCATGACTTTCAGGATTTGTCTGATCGCAAGCTTTGCATTTCATCTGGTGATTGTATTGCTGCTATTGGGAATTCTGTTGTTGGCTCTACAGAAACTGGAACCTTCCAAACATCTGGTGTGGGGTTGATAACAGAAAATTTAATTAACTGTAACTTGCAAAGTTGGGTGACCACTTTTCCTGATATTTCTTCCAAGGCAATGGTTGGTCTGAATAAAAGTAGTAATTTGGTCTTCAACGATATTCAGAGTAGCAATACTGCTACTCAGCCTGCAATTCCTGGCGGTGAGAAAGCAAGGGGGCCTTTTTCTTCTTCAGGTCAGTGCCAAGGTACAAGCCCTGCTGCATCTAGTCTACATGTTTGCTGCTCTGATATTAAAACTACATCAACTGTTGCTTCAGAACAAAGCTCATCTAAGTATGCAACTCCTGTTATGAGTGGGTGTCCTCGTGTGTTCTGCATGGGAACAAGTGGTCATCTTCTTCTTAGCAATACAGGGCTTCTTGGTATTGTTTGCTCATGCCATTGTTGCCACATGTCTATTCTTAAGTTTTGTGAGCATTCAGGGTTACATGGCGTTGACCCAGGGGATGCTGTTTGTATGGAAAGTGGGGAGACCATTTCTCAATGGCAGAAGCTATACTTCTTGAAGTTTGGGATTAGGTCTCTGGGGAATGAGAATGAATGGGACTGGCCAGAAGTATTATCAACAACAAGCAGTGTGATGAGATCTGATGCATCTTCATTTGATATGTCCAAGACTAATTTGTCTCATATGTTGAGTTCATCTGCAGTCATGTCAAGGTCTGGAAAGTCTTCTGAGTATGTCATGTTACCAAAAAATGTTCATACTGGTGCAATGTCCAGAAAACAAGCAACACAAATCCAGGATGGTCCACTCAAAGGTTTTACTGGTATTTCACAAAACAGCTTGCATGATCAGTTGAAAAACCAGTTAATGGAATCTAATCTGGCTATGTATACAACTGCACCAAACTTTGTTGGAATTCAACTGGATGATGGTTGTCAGCCTATACCTCCTTTCTTTGATTCTCTAAAAATGAAAGGAAATTTGTCTACTGCCCATTCTCCTTTGCAAACTCCAACAAACCTTTTGAAAGACCATGATTGCATGAAAAAAAAGAATGCAAATGATGGTCTTGTAGGCAAAGATGCAGCTTCCTCCAATGTTGATCTTAGGCTTGGTCAACCACCTCAGGCAGGAAATCCACTTCCATCATTTATAGAACCACTGCTGTTCAATGCCCTTGCCAGTCCTCCAAAATTGCAACTGCTGAAGCAGACGATTAATAACCTCAGCAGGGAGGAGGAATTACAGAATAAGTTTAGCTATGCTGCTGGTTCAATCAAAATGGTTGGAGAAATGCCTCAGCATAAACCCAATAACTATATGTCTGTTCACTCTGCTGTGAATAATGCTTCTGCTAGAGCTAGTGAAAATTTGTGGAATGATTACGGTCATGTAAGAAGGCAATCAAACAATTCTGACGAAAGGACCAATAAATGTTTGGACAATCATAAAGGGGTGAACTTTGCTAAAGACTCTGGTGCCAAAATAAATTCTGGATTTGGTATTGGTCAGTTAATGGAATATCCAAGGCCCATCACGAAAGCTGCTGGTGGTAGTGCTAGCTGTATTTTGGATTTTAATGGAAAGATATATGAATCAAGCTTGCCATCGGATACATCCATGTGTGCAGATATTTTGTGTGGTTCAAACAATGTATCCATTCTTGGACATGCAAATCATGTGACTCCACAGTCATCCATTCCATTTGAAGGGATTTTGAAAGGCCTTCCCTGTCATGTTTCAAGTTGTGTGTCAAATCAGACTCCTACATTGCCACAGCAGCAGCAGGGCATTAATGATGCTTATTCGCTCGATGAAAACATGAGGTTTCTTGCATTGACACAGATACTGGAGTTATCTAAGCAACATCATGCATTGTATTTTAATAATACGAATCAGAAGCAAGGGAGATCTAGCAGTATTTCAAAAGTTCAGCATTATATGTATGAGGCTTCAATATCTGAACAGGGCACTTCTAGCACAACATTGAAATTGCCCCAAAATAGAGGGATTTGTGGGAATCATGAGAGTACTGCTGGTATGAACAGATATTGTCATTTGTCTGGCCTGTCACCAATACCTTTACATTCTAAAGAAAAGGAATTACAATGTGATCATTCTTTTGATCTTCAAAATGAAGAGACTTCTTTAAGCCTTGGAATAAACAAAGACAATACCAGATCAATTGCATGTGAAAAATGCTCCGAGCAACTGTCAAATATATGTTTAGGATGCAAGTACACTTGTGCTGCCCGGATAAACTGTTGCAGAAGTAATTTTTTCTCAGGAATTGAACCTCTTTGTTGTAACTTAAAGCAACAATTTGCTAATTCCAGTGGTGAAACTTCTTTGAAGATGGCTTCCAATTTGAGTAGAGATGTGAATACTTTGAAGGGTGAAAATATCCACATTGAGCAGGCTGGGAAGTTAGATGGCCAAGAGTCGATCAAAATTGACTTTCATACACCTCAATGGAGAGATGTGCCAAGTAAGGTCAGGAAAGCAGTTTGTGATGCAACATCTTTAAATCATACAGCTACTGGTTTGGATTGGGAAGAGCAAGACGGTGTTCAACTTGGAAACATTTCTATGAAACGCTTCAAAAGAACCATTGATATGAGAGACATGTCTAAAGACCTAGAAAATTCTAATGTTTCTTCTGGATGCTCTGCTCCTGTTGTTACTCAGGCATCTGTGGAGGTCAACAATATTGATACCTGTACTGTTGATGCTGTAGATACTGGCTTTGTCAACAACCCTATAGTAGATGAAGGGTCAGGTATTGATCAAGACTGGTCGTCAGATTTGGTTGATTGTGAAAGAAGTGAGGAGTTTCTCGGCTCGACCTCTGGGAGTAACTTGAAAAATGGTTATCTGAGAGTCTTAAATGATCAACCATGTTGCAATCTCCTTGATGACCTTAAACTGTTAGATTCCTTGATATGGAAGGAAGGACGGAATCAAAATCATTTTGTGCTTTCTGCTAATTGTAAAGCCAATAAATCTCAAAAAGTCAGCAGGGGCCTCAAAGGAAAAAAGCGAAAAAGAAGTGTGGTGAGGATTCTAGATGCCTCATTATCTTCTGAATTCCCTTCCTTATTGCATAAAAAGAATCTTGCTTCTGATTGTTTTGAGCAGTTTCAAATGCAAGAACCAGCCTATGAGGAACCTGAAAATGATAAGTTGAGGCCATTCTCTTGCAGGAAAGAAAATGCTCATAGAATCACAAGGCCAGTAGTATGTGGAAAATATGGTGAAATATCTAATGGGCATTTGGCTAGAGAGGTGCAAAAACCAGCAAAAATTGTCTCTCTCAGCAAGGTTCTTAAAACTTCGAAGAGATGTATGGGCCATGCAAATGGAAAACCTAGACTAACTTCAAAAAAGAAATGGAAGAGATTGAGCATTGGAACAAGTAGTGGGCACTACTGTGGGAACCCTGGTTTAAAAATTAAGGAACACAATGAAACCCAAAATACAATAATTTTTAATGAAACAGATGTTGATGTGTCGATGGAATATTTGGAGAGAGGTGGCAAGTCACCTGTCGTTTACAAAGGGAAGAAAGATGTCAAAGATAAGCAGGGTGAGAGTGCTGGAAGTAGAGCTAATGTTTCATTGAAGGTGAAGAACAAGGAAATTCAAAAACAGCGTAGCATTAATGAACTCACTGCTAAAGAGAATTATTTTCTTGAGAAATGCCTCCTCACAAAGGTTTTTAAATGCATGCCAGAAACCAAAGTGATGGATATGATGAATTGTGCTCAAGATAGGGATCCTGGTTTGTGTAGCGCAAAAAGTAGAAATTCTATTCAAGGTCACATGAGCATATCCACCATAAATTCAGATGCTTTCTGCTGTGTGTGTCGAAGCTCAAGCAATGATAAAATCAACTGTTTGTTGGAGTGTAGTCGATGTCTGATTAGAGTGCATCAAGCTTGCTATGGTGTTTCCACATTACCCAAAAAAAGTAGTTGGTGTTGCAGGCCATGCCGAACAAACTCAAAAAATATTGTATATGCAATAAGCATTTTGAATTTTCCATTTAATTTCTCAATTCTCATAGAATATCTTCCATTTATAGCAAGTTCTGTATTTAGGAATCAATTTAACACTTCTATCCATTCTTTTTATTTTGGTGGGTCCAACATCAAGGCTTGTGTCCTTTGTGGTTATGGAGGTGGAGCCATGACTCGAGCAATAATGAGTCACATGATTGTCAAGAGCCTCCTGAAACTGTGGAATGGTGAGAAAGATGGCATGCCAAAGCATACAACTTCATCTGAAGTTTTTGAAAAGGAAATAGATGCATTTCCTTCCTCAAAAGATGGACTAGAAGTTGATCAAGACAGTGTTTTGAAGCCCAAAATCGTTCATACATCAACAGATCTGATGAAAGTTCAAATATCTACAATTCACATACAAGACACTCCAACCTCTTTTTCTAATTTCAAGGTACAGAATAGCATTACAGCTGGAGTTCTTGATCCAAATGTTAAACAATGGATTCATATGGTTTGTGGTCTTTGGACTCCTGGAACAAGATGCCCCAATGTTGACACCATGAGTGCTTTTGATGTATCTGGTGTTTCACGTCCACGAGCTGAAGTGGTTTGTTCCATTTGCAACCGACGAGGTGGTTCTTGTATAGAGTGTAGGATTGCTGATTGCTCTGTCAAGTTTCATCCTTGGTGTGCTCATCAAAAGAACCTCTTGCAAAGTGAGGCTGAAGGTATTGATGATGAGAAGATTGGATTTTATGGAAGATGCATGCTTCATACTATTGAACCTAGATGCCTGTCCATATATGTTTGTCTTGATGAAATAGGCAGTCAAGAAGGAAAGGAATTAACCTGTGCCAGGGTGGAGGGTTACAAAGGGCGTAGATGGGATGGTTTTCAGAATAATCATGGCCAAGGTGGATGCTTTGTTCCTGAGGAGCAGCTAAATGCTTGGATTCACATTAATGGGCAGAAACTATGTTCAAAGGGACTCCCAAAATTCCCAGATTTAGATATTGAACATGATTGTCGAAAGGAATATGCTCGGTTCAAACAAGCAAAGGGATGGAAACACCTTGTTGTATACAAGTCCCGTATACATGCCCTTGGTCTTTACACTTCTCAATTCATTTCACGGGGTAAAATGGTTGTTGAGTATATTGGTGAAATTGTGGGTCTGCGTGTGGCTGATAAAAGAGAAAAGGAATATCAATCTGGAAGGAAACTTCAGTATAAGAGTGCTTGCTACTTCTTCAGGATAGACAAAGAGCATATTATTGACGCCACAAGGAAAGGGGGGATTGCTCGATTTGTTAACCACTCATGCCTGCCAAATTGCGTGGCAAAAGTGATCACCGTAAGACATGAGAAGAAGGTTGTCTTCTTGGCAGAGAGGGACATATTTCCTGGTGAAGAGATTACGTATGATTACCACTTCAACCCTGAAGACGAAGGAAAGATTCCATGTTACTGCAATTCAAAAAATTGCAGGCGCTATATGAACTGA 5775 0.3976 MNASYCLYPQVAHGLISKFVGGKQGPVSSFPHSTYHGSGQANTGNSFLGLLHGPPSLLQHDFQDLSDRKLCISSGDCIAAIGNSVVGSTETGTFQTSGVGLITENLINCNLQSWVTTFPDISSKAMVGLNKSSNLVFNDIQSSNTATQPAIPGGEKARGPFSSSGQCQGTSPAASSLHVCCSDIKTTSTVASEQSSSKYATPVMSGCPRVFCMGTSGHLLLSNTGLLGIVCSCHCCHMSILKFCEHSGLHGVDPGDAVCMESGETISQWQKLYFLKFGIRSLGNENEWDWPEVLSTTSSVMRSDASSFDMSKTNLSHMLSSSAVMSRSGKSSEYVMLPKNVHTGAMSRKQATQIQDGPLKGFTGISQNSLHDQLKNQLMESNLAMYTTAPNFVGIQLDDGCQPIPPFFDSLKMKGNLSTAHSPLQTPTNLLKDHDCMKKKNANDGLVGKDAASSNVDLRLGQPPQAGNPLPSFIEPLLFNALASPPKLQLLKQTINNLSREEELQNKFSYAAGSIKMVGEMPQHKPNNYMSVHSAVNNASARASENLWNDYGHVRRQSNNSDERTNKCLDNHKGVNFAKDSGAKINSGFGIGQLMEYPRPITKAAGGSASCILDFNGKIYESSLPSDTSMCADILCGSNNVSILGHANHVTPQSSIPFEGILKGLPCHVSSCVSNQTPTLPQQQQGINDAYSLDENMRFLALTQILELSKQHHALYFNNTNQKQGRSSSISKVQHYMYEASISEQGTSSTTLKLPQNRGICGNHESTAGMNRYCHLSGLSPIPLHSKEKELQCDHSFDLQNEETSLSLGINKDNTRSIACEKCSEQLSNICLGCKYTCAARINCCRSNFFSGIEPLCCNLKQQFANSSGETSLKMASNLSRDVNTLKGENIHIEQAGKLDGQESIKIDFHTPQWRDVPSKVRKAVCDATSLNHTATGLDWEEQDGVQLGNISMKRFKRTIDMRDMSKDLENSNVSSGCSAPVVTQASVEVNNIDTCTVDAVDTGFVNNPIVDEGSGIDQDWSSDLVDCERSEEFLGSTSGSNLKNGYLRVLNDQPCCNLLDDLKLLDSLIWKEGRNQNHFVLSANCKANKSQKVSRGLKGKKRKRSVVRILDASLSSEFPSLLHKKNLASDCFEQFQMQEPAYEEPENDKLRPFSCRKENAHRITRPVVCGKYGEISNGHLAREVQKPAKIVSLSKVLKTSKRCMGHANGKPRLTSKKKWKRLSIGTSSGHYCGNPGLKIKEHNETQNTIIFNETDVDVSMEYLERGGKSPVVYKGKKDVKDKQGESAGSRANVSLKVKNKEIQKQRSINELTAKENYFLEKCLLTKVFKCMPETKVMDMMNCAQDRDPGLCSAKSRNSIQGHMSISTINSDAFCCVCRSSSNDKINCLLECSRCLIRVHQACYGVSTLPKKSSWCCRPCRTNSKNIVYAISILNFPFNFSILIEYLPFIASSVFRNQFNTSIHSFYFGGSNIKACVLCGYGGGAMTRAIMSHMIVKSLLKLWNGEKDGMPKHTTSSEVFEKEIDAFPSSKDGLEVDQDSVLKPKIVHTSTDLMKVQISTIHIQDTPTSFSNFKVQNSITAGVLDPNVKQWIHMVCGLWTPGTRCPNVDTMSAFDVSGVSRPRAEVVCSICNRRGGSCIECRIADCSVKFHPWCAHQKNLLQSEAEGIDDEKIGFYGRCMLHTIEPRCLSIYVCLDEIGSQEGKELTCARVEGYKGRRWDGFQNNHGQGGCFVPEEQLNAWIHINGQKLCSKGLPKFPDLDIEHDCRKEYARFKQAKGWKHLVVYKSRIHALGLYTSQFISRGKMVVEYIGEIVGLRVADKREKEYQSGRKLQYKSACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVITVRHEKKVVFLAERDIFPGEEITYDYHFNPEDEGKIPCYCNSKNCRRYMN 1924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1180 1924 Pfam SET domain 1793 1900 IPR001214 GO:0005515
Aed6g1180 1924 Pfam PHD-finger 1387 1421 - -
Aed6g1180 1924 SMART set_7 1780 1907 IPR001214 GO:0005515
Aed6g1180 1924 ProSiteProfiles Extended PHD (ePHD) domain profile. 1569 1683 IPR034732 -
Aed6g1180 1924 SMART PostSET_3 1908 1924 IPR003616 -
Aed6g1180 1924 Pfam Tify domain binding domain 226 272 IPR032308 -
Aed6g1180 1924 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 1475 1924 - -
Aed6g1180 1924 CDD ePHD 1590 1682 - -
Aed6g1180 1924 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1361 1427 IPR013083 -
Aed6g1180 1924 CDD SET_SETD1-like 1782 1920 - -
Aed6g1180 1924 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE TRITHORAX 1475 1924 - -
Aed6g1180 1924 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE TRITHORAX 28 1428 - -
Aed6g1180 1924 ProSiteProfiles Post-SET domain profile. 1908 1924 IPR003616 -
Aed6g1180 1924 ProSiteProfiles SET domain profile. 1780 1901 IPR001214 GO:0005515
Aed6g1180 1924 SUPERFAMILY SET domain 1742 1920 IPR046341 -
Aed6g1180 1924 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 28 1428 - -
Aed6g1180 1924 SMART PHD_3 1374 1421 IPR001965 -
Aed6g1180 1924 SMART PHD_3 1627 1683 IPR001965 -
Aed6g1180 1924 ProSitePatterns Zinc finger PHD-type signature. 1375 1420 IPR019786 -
Aed6g1180 1924 ProSiteProfiles Zinc finger PHD-type profile. 1372 1423 IPR019787 -
Aed6g1180 1924 Pfam PHD-zinc-finger like domain 1589 1663 - -
Aed6g1180 1924 SUPERFAMILY FYVE/PHD zinc finger 1369 1426 IPR011011 -
Aed6g1180 1924 Gene3D SET domain 1711 1924 IPR046341 -
Aed6g1180 1924 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1569 1683 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1180 Aed-Chr6 16557993 16575447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1180 1782 1920 C2H2 Transcription Factor Family AT2G23740 35.220 7.73e-18 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aed6g1180 SET 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1180 - - gmx:100816713 1730.3