Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1147 ATGGTACAAGCAAGGAAGTTCAGGGGAGTGAGGCAGCGCCAATGGGGCTCATGGGTCTCAGAAATTCGACACCCATTACTGAAGAGAAGGGTGTGGCTAGGTACATTTGAGACAGCAGAGGCAGCAGCTAGGGCATATGACCAAGCAGCAATTCTAATGAGTGGCCAAAATGCCAAGACAAATTTCCCACCAACACCAATATTAATGGATCAGCCTGCTAATAGTACTTTCTCATCTTCAAATGTTCTTTCTGAGAATCTGAGTAGAAAACTGAAGAGGTGCTGCAAAGACCCTTCTCCATCACTCACATGTCTGAGGCTAGATGCTGATAATTCCCACATTGGAGTGTGGCAAAAGGGTGCAGGACCACATTCTGATTCCAATTGGATTGTGAGGGTGGAGCTTGGAAAGAAACATAGTAATAATATTGGAGATCAGGGTGAGTCATCAAGTAGTGTATCATCTTCATCATCATCATTAGGGTCACCACCAAAAAGTGTTGTTGGTGATCATGATCATCATCATGGTGATGAAGAGGATAGAATTGCCATGCAGATGATTGATGAGTTACTAAATTGGAATGTTATTCATCCATTTGCTTCAAGTATTTAA 612 0.4265 MVQARKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMSGQNAKTNFPPTPILMDQPANSTFSSSNVLSENLSRKLKRCCKDPSPSLTCLRLDADNSHIGVWQKGAGPHSDSNWIVRVELGKKHSNNIGDQGESSSSVSSSSSSLGSPPKSVVGDHDHHHGDEEDRIAMQMIDELLNWNVIHPFASSI 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1147 203 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 196 - -
Aed6g1147 203 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Aed6g1147 203 MobiDBLite consensus disorder prediction 142 164 - -
Aed6g1147 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 196 - -
Aed6g1147 203 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Aed6g1147 203 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Aed6g1147 203 MobiDBLite consensus disorder prediction 140 175 - -
Aed6g1147 203 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Aed6g1147 203 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Aed6g1147 203 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Aed6g1147 203 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Aed6g1147 203 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1147 Aed-Chr6 16163823 16165495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1147 1 194 AP2-EREBP Transcription Factor Family AT1G15360 54.634 3.06e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed6g1147 AP2 3.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1147 - - gmx:100784305 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1147 6 16163823 16165495 Aed6g1147 6 16163823 16165495 ECH
Aed4g1799 4 22237880 22240343 Aed6g1147 6 16163823 16165495 ECH
Aed6g1774 6 21205133 21206149 Aed6g1147 6 16163823 16165495 ECH