Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1130 ATGAAACTGCTTGTAGACAATGGTGCAGACATATCATCATGTGATGTAGGTTCTTTTGCATGCATGGCTGTTGAGCAAAACAACTTAGAATATCTCAAGGACCTTGTTCAATGTGGAGGGGATGTGACACTATCCTCCACAAGCAACAATGGAACCACAGCACTCCATGCTGCAGTGTGTGAAGCGAATGTTGAAATACTGAAGTTCCTTCTGGATCATGGAGCAGACATTGATAAGCAAGATGGTAGTGGCTTGACTCCAAGGTATTTAGCAGATCAACAAGGCCATGAGGAAATTCAAAGCATTTTCCAAAAAATTGGACACAACAACAAAGCACCACATGGTATCCCCAAAGTATCTTTTGTTGCACCAAGTTGTCAAAGTGAGCCAAATATACCAGGCATTCCCCAAGGAAGCAAGCCACCTTATAATAATCAAGAACTGACATGGTTTGATAATCATCAAAGAAGAAGGATCTTAAAAAAGATTCCACAATTGCATCTCAAACAAGGTACAATGGTAGAGAAGAATTACCAGTTAGAGTAA 546 0.4029 MKLLVDNGADISSCDVGSFACMAVEQNNLEYLKDLVQCGGDVTLSSTSNNGTTALHAAVCEANVEILKFLLDHGADIDKQDGSGLTPRYLADQQGHEEIQSIFQKIGHNNKAPHGIPKVSFVAPSCQSEPNIPGIPQGSKPPYNNQELTWFDNHQRRRILKKIPQLHLKQGTMVEKNYQLE 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1130 181 SUPERFAMILY Ankyrin repeat 2 110 IPR036770 -
Aed6g1130 181 Gene3D - 1 105 IPR036770 -
Aed6g1130 181 Pfam Ankyrin repeats (3 copies) 1 81 IPR002110 GO:0005515
Aed6g1130 181 ProSiteProfiles Ankyrin repeat region circular profile. 50 81 - -
Aed6g1130 181 ProSiteProfiles Ankyrin repeat profile. 50 82 IPR002110 GO:0005515
Aed6g1130 181 PANTHER POTASSIUM CHANNEL AKT1 1 159 IPR045319 GO:0005249|GO:0006813
Aed6g1130 181 SMART ANK_2a 50 79 IPR002110 GO:0005515
Aed6g1130 181 SMART ANK_2a 15 44 IPR002110 GO:0005515
Aed6g1130 181 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 1 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1130 Aed-Chr6 15907450 15908986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1130 1 132 Ion Channels AT2G26650 45.714 2.13e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1130 K21867 - gmx:100808832 231.876