LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g1128	ATGTCTGCAACGATTGTGGTGGCACATTCGAGTTCTTGGGCCAGGGCACTTGTTTCGATCTCGCCCTACACCTTCTCCGCCATCGGCATCGCCATCTCAATCGGCGTCTCCGTCCTCGGCGCCGCCTGTGTAATCTTCTGTGAAGCTGTTGCTATATATGGTGTTATTGTGGCTATTATTCTTCAAACAAAATTAGAAAGCGTTCCAGCAGCAAATATCTATGCAGCGGAGTCTCTTAGGGCTGGATATGCAATCTTCGCATCGGGATTAATCGTGGGCTTCGCAAATCTTGTTTGTGGGTTGTGTGTAGGAATAATCGGAAGCAGCTGTGCATTGTCTGATGCCCAGAACTCCTCTCTCTTTGTGAAAATTCTTGTGATCGAGATCTTTGGCAGCGCACTGGGGCTATTCGGAGTTATCGTTGGGATCATTATGTCAGCTCAAGCAACATGGCCAACGAAAGTTTAG	468	0.4808	MSATIVVAHSSSWARALVSISPYTFSAIGIAISIGVSVLGAACVIFCEAVAIYGVIVAIILQTKLESVPAANIYAAESLRAGYAIFASGLIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPTKV	155

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed6g1128	155	PRINTS	Vacuolar ATP synthase 16kDa subunit signature	41	65	IPR000245	GO:0033179\|GO:0046961\|GO:1902600
	Aed6g1128	155	PRINTS	Vacuolar ATP synthase 16kDa subunit signature	97	123	IPR000245	GO:0033179\|GO:0046961\|GO:1902600
	Aed6g1128	155	PRINTS	Vacuolar ATP synthase 16kDa subunit signature	124	147	IPR000245	GO:0033179\|GO:0046961\|GO:1902600
	Aed6g1128	155	PANTHER	V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT	4	42	-	-
	Aed6g1128	155	Gene3D	-	23	152	IPR035921	-
	Aed6g1128	155	SUPERFAMILY	F1F0 ATP synthase subunit C	79	146	IPR035921	-
	Aed6g1128	155	PANTHER	V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT	4	42	-	-
	Aed6g1128	155	CDD	ATP-synt_Vo_c_ATP6F_rpt2	81	145	-	-
	Aed6g1128	155	PANTHER	V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT	43	153	-	-
	Aed6g1128	155	PANTHER	V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT	43	153	-	-
	Aed6g1128	155	Pfam	ATP synthase subunit C	86	145	IPR002379	GO:0015078\|GO:0033177\|GO:1902600

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g1128	Aed-Chr6	15892328	15896028	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed6g1128	9	154	Primary Pumps ATPases(2)	AT2G25610	77.907	9.71e-85	246

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed6g1128	K03661		-	gmx:100527177	241.506