LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g1123	CAATTTCACTCTTTCTCAAACAACCTCAGATCTGTCTCTCTCTTTCTCTCTGCAATCTCTCACGCTCGGTTCGTTTTCCGCCAAATCTTAGCTTCGTTTTCCAGCGCTGAAGCTTCTGCGTTACAGTTAAACGGCACTGCTTTCTGTTCTCGTTCTCCGCGGTTACAGAAGAACTCTGAGATCCAATCACAATCATTCATTTCAATACCATTTGCAACACGAACACTAACCATGTCTGTGACGATTGTGGCGGCACATTCAAGTTCTTGGGCCAGGGCACTTGTTTCGATCTCGCCCTACACGTTCGCTGCCATTGGCATCGCTGTCTCAATCGGCGTCTCCGTCCTCGGCGCCGCCTGGGGGATCTACATCACTGGTAGTAGCCTGATCGCTGTTGCTATATATGGTGTTATTGTGGCTATTATTCTTCAAACAAAATTAGAAAGCGTACCAGCAGCAAATATCTATGCAGCCGAGTCTCTGAGGGCTGGATATGCAATCTTTGCATCGGGATTAATTGTGGGCTTCGCAAATCTTGTTTGTGGGTTGTGTGTAGGAATAATTGGAAGCAGTTGTGCATTGTCTGATGCCCAGAACTCCTCTCTCTTTGTAAAAATTCTCGTGATCGAGATCTTTGGCAGCGCGCTGGGTCTATTCGGAGTTATCGTTGGGATCATTATGTCGGCTCAAGCAACATGGCCGACGAAAGTTTAG	714	0.4706	QFHSFSNNLRSVSLFLSAISHARFVFRQILASFSSAEASALQLNGTAFCSRSPRLQKNSEIQSQSFISIPFATRTLTMSVTIVAAHSSSWARALVSISPYTFAAIGIAVSIGVSVLGAAWGIYITGSSLIAVAIYGVIVAIILQTKLESVPAANIYAAESLRAGYAIFASGLIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPTKV	237

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed6g1123	237	Pfam	ATP synthase subunit C	168	227	IPR002379	GO:0015078\|GO:0033177\|GO:1902600
	Aed6g1123	237	CDD	ATP-synt_Vo_c_ATP6F_rpt2	163	227	-	-
	Aed6g1123	237	PANTHER	V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT	131	235	-	-
	Aed6g1123	237	PANTHER	V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT	81	133	-	-
	Aed6g1123	237	PRINTS	Vacuolar ATP synthase 16kDa subunit signature	179	205	IPR000245	GO:0033179\|GO:0046961\|GO:1902600
	Aed6g1123	237	PRINTS	Vacuolar ATP synthase 16kDa subunit signature	206	229	IPR000245	GO:0033179\|GO:0046961\|GO:1902600
	Aed6g1123	237	PRINTS	Vacuolar ATP synthase 16kDa subunit signature	123	147	IPR000245	GO:0033179\|GO:0046961\|GO:1902600
	Aed6g1123	237	PANTHER	V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT	131	235	-	-
	Aed6g1123	237	PANTHER	V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT	81	133	-	-
	Aed6g1123	237	SUPERFAMILY	F1F0 ATP synthase subunit C	161	228	IPR035921	-
	Aed6g1123	237	Gene3D	-	100	234	IPR035921	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g1123	Aed-Chr6	15838565	15841972	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed6g1123	83	236	Primary Pumps ATPases(2)	AT2G25610	80.000	1.76e-89	262

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed6g1123	K03661		-	gmx:100527177	264.233