Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1116 ATGTCTCAGACCAACTGGGAAGCTGATAAGATGTTAGATGTTTATATCCATGATTACCTAGTGAAGAGGGATTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTGTCCTCGGACCCTGTTGAGTGTTGTGGCTATGGGCTGCTTGGTGGGAGCCCTGTCACACTGCAGTTTGCGGTTGTGCAAAGATTTGGAGACCAACTCTTAGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTACCGGCCAGCCTTCAGGCCAAGTTTTGCATGGTGCTGCTGGTGCAATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGATCTACTCCGGATATAAAGAGTGAGATCAATCCTGTTTTAAATCCCAGAGCTGTGGGTCCTGAAGGATCGTTGATAGGAATGCCCGGTTCGAATCAAGGTAGCAACAATTTGACTCTGAAAGGGTGGCCACTCACAGGCTTTGAGCATCTACGTTCTGGTCTACTCCCGCAACAGAAACCTCCTTTCATACAGTCTCCTCAGCCATTTCATCAACTTCCAATGTTGACACAGCATCAGCAACAGCTAATGCTTGCACAACAAAATTTGGCATCTCCATCTGCCAGTGATGATAATAGAAGACTCAGAATGCTGCTGAATAATAGGAATAATATGGGTGTAACTAAGGATGGTCTTTCAAACCCTGTTGGTGATATAGTATCAAATGTTGGATCACCTCTTCAAGCAGGTGGCCCTGCTTTTCAGCGCAGTGAAACAGATATGCTAATGAAGTTGAAACTGGCGCATTTACAACATCAACAACAGCAGAATGCCAATCCACAACAGCAGCAACTGCAACATCCTACTCTTTCGAATCAGCAATCTCAGTCTTCAAATCATAGCATGCACCAGCAAGATAAAATGGGGGGAGGTGGTGGTAGTGTCAATGTGGATGGCAGCATGTCAAACTCCTTTAGAGGCAATGAACAGGTTTCCAAAAACCAACCTGGGAGAAAGAGAAAGCAGGCTGCATCTTCTGGTCCTGCCAATAGTTCCGGAACAGCTAATACAGCTGGTCCATCTCCAAGTTCAGCACCCTCAACTCCCTCAACACATACACCTGGTGATGTGATGTCAATGCCTGCTTTACCTCATAGTGGCAGTTCTTCAAAGCCATTAATGATGTTTAGTGCTGATGGTGCCGGAACTCTGACGTCACCTTCAAACCAATTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGACCGTTTTGTGGAGGATGGATCTCTTGATGATAATGTGGAGTCTTTTTTATCCCATGATGATGCTGACCCTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGATATTCCTGTGGAAACTGAGGCCAAGGATTCAATTTATTCAGGTTTCACATTTTCTGAAATGAATTCTGTACGTGCGAGCACTAACAAAGTTGTCTGCTGCCATTTCTCCTCTGATGGGAAATTGCTTGCTAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTTCACAGATTCTCTAAAACAGAAAGCTACCCTTGAAGAGCATGCATCTTTAATCACTGATGTCCGATTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATATGACAAAACTGTTAGGGTGTGGGATGTTGAAAATCCTGGGTATTCGCTTCGTACCTTTACAGGACATTCTTCATCTGTCATGTCACTAGATTTTCACCCTAATAAAGAGGATCTTATCTGTTCTTGTGATGTTGATGGCGAGATACGATATTGGAGCATTAACAATGGCAGTTGTGCTAGAGTCTCAAAGGGAGGCACTGCTCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTAGCTGCAGCTGCAGAGAATGTTGTTTCTATCCTTGATGTGGAAACACAAGCATGTCGATATTCATTAAAGGGACATACAAAATCGATACATTCTGTGTGTTGGGATCCTTCTGGGGAGTTTCTGGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCCGGGAGCGAAGGGGAGTGTGTTCACGAGCTTAGCTGTAATGGCAATAAGTTCCACTCATGTGTTTTCCATCCAACGTATTCTTCGCTGTTGGTCGTTGGTTGTTACCAGGCAATTAGATTTGTAATTTTGACCTTTCACAATTGGTACCATTATCTGCAGTCATTGGAGCTCTGGAACATGACCGAGAACAAGACGATGACTCTATCTGCGCATGAAGGTCTTATTGCGGCGTTGGCTGTTTCTACTGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTCAAGCTCTGGAAGTGA 2352 0.4473 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVECCGYGLLGGSPVTLQFAVVQRFGDQLLDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRAVGPEGSLIGMPGSNQGSNNLTLKGWPLTGFEHLRSGLLPQQKPPFIQSPQPFHQLPMLTQHQQQLMLAQQNLASPSASDDNRRLRMLLNNRNNMGVTKDGLSNPVGDIVSNVGSPLQAGGPAFQRSETDMLMKLKLAHLQHQQQQNANPQQQQLQHPTLSNQQSQSSNHSMHQQDKMGGGGGSVNVDGSMSNSFRGNEQVSKNQPGRKRKQAASSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSGSSSKPLMMFSADGAGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDDNVESFLSHDDADPRDTVGRCMDVSKDIPVETEAKDSIYSGFTFSEMNSVRASTNKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKQKATLEEHASLITDVRFSPSMPRLATSSYDKTVRVWDVENPGYSLRTFTGHSSSVMSLDFHPNKEDLICSCDVDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQAIRFVILTFHNWYHYLQSLELWNMTENKTMTLSAHEGLIAALAVSTVNGLVASASHDKFVKLWK 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1116 783 Pfam WD domain, G-beta repeat 563 600 IPR001680 GO:0005515
Aed6g1116 783 Pfam WD domain, G-beta repeat 521 556 IPR001680 GO:0005515
Aed6g1116 783 Pfam WD domain, G-beta repeat 746 783 IPR001680 GO:0005515
Aed6g1116 783 Pfam WD domain, G-beta repeat 483 513 IPR001680 GO:0005515
Aed6g1116 783 Pfam WD domain, G-beta repeat 645 679 IPR001680 GO:0005515
Aed6g1116 783 Gene3D - 452 614 IPR015943 GO:0005515
Aed6g1116 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 482 513 IPR001680 GO:0005515
Aed6g1116 783 Gene3D - 733 783 IPR015943 GO:0005515
Aed6g1116 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 751 783 - -
Aed6g1116 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 524 559 IPR001680 GO:0005515
Aed6g1116 783 ProSitePatterns Trp-Asp (WD) repeats signature. 543 557 IPR019775 -
Aed6g1116 783 MobiDBLite consensus disorder prediction 269 392 - -
Aed6g1116 783 SUPERFAMILY WD40 repeat-like 475 783 IPR036322 GO:0005515
Aed6g1116 783 MobiDBLite consensus disorder prediction 85 123 - -
Aed6g1116 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 567 609 IPR001680 GO:0005515
Aed6g1116 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 751 783 IPR001680 GO:0005515
Aed6g1116 783 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 44 - -
Aed6g1116 783 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 64 783 - -
Aed6g1116 783 Pfam LisH 10 36 IPR006594 GO:0005515
Aed6g1116 783 MobiDBLite consensus disorder prediction 315 374 - -
Aed6g1116 783 SMART Lish 8 40 IPR006594 GO:0005515
Aed6g1116 783 SMART WD40_4 475 514 IPR001680 GO:0005515
Aed6g1116 783 SMART WD40_4 642 680 IPR001680 GO:0005515
Aed6g1116 783 SMART WD40_4 560 600 IPR001680 GO:0005515
Aed6g1116 783 SMART WD40_4 744 783 IPR001680 GO:0005515
Aed6g1116 783 SMART WD40_4 517 556 IPR001680 GO:0005515
Aed6g1116 783 SMART WD40_4 686 725 IPR001680 GO:0005515
Aed6g1116 783 Gene3D - 615 723 IPR015943 GO:0005515
Aed6g1116 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 524 559 - -
Aed6g1116 783 MobiDBLite consensus disorder prediction 269 304 - -
Aed6g1116 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 567 605 - -
Aed6g1116 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 649 689 IPR001680 GO:0005515
Aed6g1116 783 MobiDBLite consensus disorder prediction 102 121 - -
Aed6g1116 783 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 44 IPR044716 GO:0003714
Aed6g1116 783 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 64 783 IPR044716 GO:0003714
Aed6g1116 783 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Aed6g1116 783 CDD WD40 482 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1116 Aed-Chr6 15728066 15738867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1116 561 782 Miscellaneous Gene Families AT5G08390 23.789 4.81e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Aed6g1116 WD40 0.068 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1116 - - gmx:100779972 1189.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1116 6 15728066 15738867 Aed4g1828 4 22495080 22504543 PCT