Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1110 ATGAGTAGAGAAAATGATGTTATCGGTGGTGGTGGCTGTGTTCGGATCACTCGAGCAATGGCCAGAGCTACTCTGGGAGGAGTCTCTGCCCCTTCAAGACCTTCCTTTAAGAAGGGAGGCAAAAAAAACAAAGTTTCGGCCAAGAGTAAGGCGGTGTTAGCAGATACAAAAGGAGGTTACAAGAAGACTAACACAAAGGGAGCTTCCGATGTCTCCATTCAAGTTTTTTCAACTCAAGATCTTAGAGCAAAGTTAGCAAAAGATTTATCCGCAATATCGATAGAACAGTCGTATGACGCTATTGTAGCCGAAATGGAGGAAGACACGGAGATATTGCAACCTTCTATGTCTGTTATGGCAGGTCCTCTGCTTTCAATGCAGGGCTCTATGAAGTCTGATGAACTCCTTAGCTCTTCAAACAAAGACATTGATATTATTACTGAGAAACTAAAACTTTCAGTTGGTTTGGGCATTGTGGACATTGATTCAATGGAGTTAAAGGATCCTCAAGTTTGGAGTTCATATGCTCCTGATATATACAATAATATACTTGTCAGGGAGTTTGATAGGAGGCCGTTAGCCGATTACATGGACGTGTTGCAGCAAGATATCACTCCAACCATGCGAGGAATTCTGATTGATTGGCTTGTGGAGGTTTCTGAGGAATATAAGCTAGTTCCAGATACTCTTTACCTTACAGTGAATCTCATTGATCGGTTTCTTTCTCAAACATGGATTCAGAAACAAAGGCTCCAGTTGCTGGGTGTTACTTGCATGCTGATTGCATCAAAATATGAAGAGATTTGTGCTCCTCGAGTGGAAGAATTTTGCTTCATCACAGAAAATACGTACTCAAAAGCAGAGGTTTCTTATGTTGAACTGGAATTTCTGGCAAATTATTTAGCAGAGCTTACTCTTGTTGAATACAGCTTCTTGCAGTTTCTACCTTCCCTGATTGCTGCATCTGCCGTGTTACTTGCCAGATGGACCCTCAACCAATCAGAACATCCATGGAATTCAACCATGGAACATTACACAAATTATAAAATGTCCGAGCTTAAAACTACTGTCCTTGCACTGGCAGATTTGCAACTTAATGCGAAAGGCTGTCCTCTGAAGGCTATATGTGAAAAATATGAACATCAGAAGTTCCAGAGTGTGGCAAATTTGTCTCCGAAACCAGTGCAGTCACTTTTCGAGGCTCAAGTATAA 1212 0.4142 MSRENDVIGGGGCVRITRAMARATLGGVSAPSRPSFKKGGKKNKVSAKSKAVLADTKGGYKKTNTKGASDVSIQVFSTQDLRAKLAKDLSAISIEQSYDAIVAEMEEDTEILQPSMSVMAGPLLSMQGSMKSDELLSSSNKDIDIITEKLKLSVGLGIVDIDSMELKDPQVWSSYAPDIYNNILVREFDRRPLADYMDVLQQDITPTMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQTWIQKQRLQLLGVTCMLIASKYEEICAPRVEEFCFITENTYSKAEVSYVELEFLANYLAELTLVEYSFLQFLPSLIAASAVLLARWTLNQSEHPWNSTMEHYTNYKMSELKTTVLALADLQLNAKGCPLKAICEKYEHQKFQSVANLSPKPVQSLFEAQV 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1110 403 Gene3D - 178 191 - -
Aed6g1110 403 Gene3D - 294 389 - -
Aed6g1110 403 Gene3D - 192 293 - -
Aed6g1110 403 SUPERFAMILY Cyclin-like 167 297 IPR036915 -
Aed6g1110 403 SMART Cyclin_C_2 273 393 IPR004367 -
Aed6g1110 403 PIRSF Cyclin_A_B_D_E 289 402 IPR039361 -
Aed6g1110 403 PIRSF Cyclin_A_B_D_E 17 297 IPR039361 -
Aed6g1110 403 Pfam Cyclin, N-terminal domain 178 298 IPR006671 -
Aed6g1110 403 CDD CYCLIN 208 297 IPR013763 -
Aed6g1110 403 ProSitePatterns Cyclins signature. 209 240 IPR006671 -
Aed6g1110 403 PANTHER CYCLIN-A2-4 292 399 - -
Aed6g1110 403 PANTHER CYCLIN-A2-4 34 293 - -
Aed6g1110 403 PANTHER CYCLINS 292 399 IPR039361 -
Aed6g1110 403 PANTHER CYCLINS 34 293 IPR039361 -
Aed6g1110 403 SMART cyclin_7 214 298 IPR013763 -
Aed6g1110 403 SMART cyclin_7 299 362 IPR013763 -
Aed6g1110 403 SUPERFAMILY Cyclin-like 284 392 IPR036915 -
Aed6g1110 403 CDD CYCLIN 293 360 IPR013763 -
Aed6g1110 403 MobiDBLite consensus disorder prediction 27 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1110 Aed-Chr6 15664045 15669990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1110 14 399 Core Cell Cycle Gene Families AT5G25380 45.796 3.15e-116 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1110 K06627 - gmx:100777132 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1110 6 15664045 15669990 Aed7g2426 7 26138171 26142148 PCT