Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1108 ATGGAGCGGCCAGGGAGCTTAAATGGCAGTCAGCATGTTATAGAAATAGCTGGGAGTGTCGATGCTTCCACAACGTCTGCATCACATCACGATAGACATTTTAACGGTGCAGCAGATGCAACACAACATGAAGAAAGAATTAGTGGTGCAAGGATGCCTCTTTCTCAGCCTTCAGTTTCAGCAACTAGTGTATCTAATGGTTCAAATAGTCGGAACTCATCGTTTTTAAGACGTGGCGATACTCGGCGGAATAGGAGTCCTGTCCATTCAGGGTTATGGATATCTATTGAGCTGGTCCTACTGGTGAGCCAGATTGTTGTGTCTATCATTGTTTTGTCTTTGTCAAGGCATGAACATCCGCGTACCCCGTTGTTTCAATGGATCATTGGTTATGCTTCTGGATGTGCTGCTACCCTCCCTCTGCTTTATTGGCGGTATTATCATCATAACCATATGCGAGAGCAAGATTCATCTCAATCAAGGCAAACATCTCCTCGGATTAGTGATCCTTCGGGGACACTTCTTTTCAGTTCCAGAACAAATGGTGGAGAAGATGGTCAGGCTGCTGTTGCATCCTCCAGAAGCAATCAAGCTTCATTATTGATGAATAGAAGAATGAAGACACTAGTGGAATACTTCAAAATATCTTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCATCTGCTGATGAAGCTCCTAATTTGTACAGGTTATGTATAGTGTTTCTTGCATTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTCCCTTGTATAATTTCTATCCTTGGGGTTAGAGAGGATATGTCACAAAACAGAGGGGCAACTTCCGAATCTATTAATGCTTTGCCAACTTACAAGTTCAAGATGAAGAAAAATAAAAGACATGGTGAAGGCAACTCAGCTGCTGCCGAAGGGGGAGTTGTGGCTGCAGGAACTGAAAAAGAGCGTGTGATATCTGGAGAAGATGCGGTTTGCTGCATCTGCCTGGCAAAGTACGAAAATAACGATGAGCTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAGGACTGCGTCGATAAATGGTTGAAGATAAATTCATTATGCCCTCTGTGCAAGAGTGATGTTGGGGAGAACTTAACAGGATCAATCTCTGGAGAAGATGCCGCCAGCCAACAACAGGGTGAGAGCAGGGTTGAGAATGGCCTCACGAATACCACCTCAGTCTAG 1266 0.436 MERPGSLNGSQHVIEIAGSVDASTTSASHHDRHFNGAADATQHEERISGARMPLSQPSVSATSVSNGSNSRNSSFLRRGDTRRNRSPVHSGLWISIELVLLVSQIVVSIIVLSLSRHEHPRTPLFQWIIGYASGCAATLPLLYWRYYHHNHMREQDSSQSRQTSPRISDPSGTLLFSSRTNGGEDGQAAVASSRSNQASLLMNRRMKTLVEYFKISLDCFFAVWFVVGNVWIFGGHSSADEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDMSQNRGATSESINALPTYKFKMKKNKRHGEGNSAAAEGGVVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINSLCPLCKSDVGENLTGSISGEDAASQQQGESRVENGLTNTTSV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1108 421 CDD RING-H2_RNF111_like 343 387 - -
Aed6g1108 421 Pfam Ring finger domain 344 385 IPR001841 -
Aed6g1108 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 327 391 IPR013083 -
Aed6g1108 421 SUPERFAMILY RING/U-box 336 391 - -
Aed6g1108 421 MobiDBLite consensus disorder prediction 38 86 - -
Aed6g1108 421 SMART ringv_2 343 385 IPR011016 GO:0008270
Aed6g1108 421 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 411 - -
Aed6g1108 421 ProSiteProfiles Zinc finger RING-type profile. 344 385 IPR001841 -
Aed6g1108 421 SMART ring_2 344 384 IPR001841 -
Aed6g1108 421 MobiDBLite consensus disorder prediction 395 421 - -
Aed6g1108 421 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 411 - -
Aed6g1108 421 MobiDBLite consensus disorder prediction 53 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1108 Aed-Chr6 15646752 15652528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1108 77 395 C3H Transcription Factor Family AT1G80400 57.585 1.78e-139 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1108 - - gmx:100778728 743.806