Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1091 ATGGGAGACGTGGCAGTAATGCACTCTGAGCCTCTGCAGTTTGAATGCAATGATATTAAACATACGGCTGAGAACAAAGTGTATCCTCCAGAATCCAATGCGGAGCACTTGCCTGGAGAAGAATCAAGTCAATCAACAGACCACAAAAATATCAATGACTTGCAAGAAAAGGGATATATGGAGTATGGATGTCAACATTACCGGAGAAGATGCCGTATTAGGGCCCCCTGTTGCAATGAGATTTTTGATTGCCGCCATTGTCACAATGAAACAAAGAATGATATCAACATTGATCAGAAGCATAGACATGACATTCCCCGACACCAAGTCAAACAGGTGATTTGTTCACTTTGTGGGACAGAACAAGAGATATCTAAGCAGCAGTACCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGAAGCGAAAATTTCTTCCATTGCTATAAGTGTGGTTGCTGCTACTCGACTCTGCTGAAAAATAGTCACCCTTGTGTAGAAGGAGCAATGCATCATGATTGCCCTGTTTGTTTCGAGTATCTGTTTGAATCAAGAAATGATGTCACTGTTATGCCATGTGGACATACAATCCATAAGAGCTGCCTGAATGAAATGAGAGAACATTTCCAGTATGCGTGTCCTCTCTGCTCAAAATCAGCCTGTGACATGTCAAAGGTTTGGGAGAAATTTGACATAGAAATTGCTGCTACACCAATGCCTGAGCAATATCAAAATAAAATAGTTTGGATCCTGTGCAATGATTGTGGTAAAACTTCCAACGTTCAGTTCCATTTTGTGGCTCAAAAGTGCCCAAACTGCAAATCCTACAACACACGACAAACATGA 846 0.4173 MGDVAVMHSEPLQFECNDIKHTAENKVYPPESNAEHLPGEESSQSTDHKNINDLQEKGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNETKNDINIDQKHRHDIPRHQVKQVICSLCGTEQEISKQQYHCSGCGICRTGGSENFFHCYKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYLFESRNDVTVMPCGHTIHKSCLNEMREHFQYACPLCSKSACDMSKVWEKFDIEIAATPMPEQYQNKIVWILCNDCGKTSNVQFHFVAQKCPNCKSYNTRQT 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1091 281 Pfam CHY zinc finger 64 154 IPR008913 GO:0008270
Aed6g1091 281 ProSiteProfiles Zinc finger CHY-type profile. 57 136 IPR008913 GO:0008270
Aed6g1091 281 MobiDBLite consensus disorder prediction 29 48 - -
Aed6g1091 281 SUPERFAMILY Zinc hairpin stack 113 167 IPR037275 -
Aed6g1091 281 SMART ring_2 174 216 IPR001841 -
Aed6g1091 281 Gene3D - 245 281 - -
Aed6g1091 281 Pfam Ring finger domain 173 216 IPR001841 -
Aed6g1091 281 ProSiteProfiles Zinc finger CTCHY-type profile. 107 173 IPR017921 -
Aed6g1091 281 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 19 125 - -
Aed6g1091 281 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 124 281 - -
Aed6g1091 281 Pfam Zinc-ribbon 221 279 IPR039512 -
Aed6g1091 281 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 124 281 - -
Aed6g1091 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 219 IPR013083 -
Aed6g1091 281 SUPERFAMILY CHY zinc finger-like 61 136 IPR037274 GO:0008270
Aed6g1091 281 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 19 125 - -
Aed6g1091 281 SUPERFAMILY RING/U-box 173 220 - -
Aed6g1091 281 ProSiteProfiles Zinc finger RING-type profile. 174 217 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1091 Aed-Chr6 15393878 15400171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1091 62 279 C2H2 Transcription Factor Family AT3G18290 35.081 7.85e-46 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1091 K10144 - gmx:100803569 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1091 6 15393878 15400171 Aed6g1091 6 15393878 15400171 ECH
Aed6g1091 6 15393878 15400171 Aed7g2411 7 26036883 26041242 PCT