Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1074 ATGGCTGCAACTTCCCTCTCCTCCGCTCTGAATTCCCTCTCCTCTCTCTCCCTCTTCTCCCGCTTCTCTCTCCTCCCTCCAGCATCCCTCAAGCCCTCCTCCCTCCTCTCCAGGCCTCTCACTCTCAAATCCAAATCCTCCGACGAAATCGACACCTCCTTCTTCGACAGCGTCAACCCGCAGGACGACATCACCTTCAACCCCCCAGAGCCCCCTGAGGGATTCGTCCCGCCCCCCTCCTTCGACGATGGCCCTCTCGAGACCGAGGACGAAATCGCGGCCGCCTACGAGGAGCTCTACGGCCCCGGCTACAGCGGCGTCTCGGTCCTCGGCAACGACGTCTACGTGATGGACGCCAAGGTGAAGAAGGAGACCGGGTTCGGGTCGGGCGCGAAGAAGGAGAAGATCAGGGACGGGTTCGAGGAGAGGGTGGTGCAGGTCAGGAGGGTCACCAAGGTCGTCAAGGGAGGCAAGCAGCTCAGGTTCCGCGCTGTCGTCGTCGTGGGGGACAAGAAGGGTCAGGTCGGCGTCGGAGTTGGGAAGGCTAAGGAAGTCATTGCCGCCGTTCAGAAGTCTGCCGTCAATGCCAGGAGGAACATCATCAAGGTCCCCATGACTAAGTACTCCACATTTCCCCACAGAGCTGATGGAGATTATGGAGCAGCAAAGGTGATGCTTAGACCTGCTTCTCCCGGTACTGGAGTTATTGCAGGTGGGTCTGTGAGAATTGTTCTTGAAATGGCCGGAGTTGATAATGCTTTGGGAAAGCAACTAGGGAGTAATAATGCACTCAACAATGCCAGAGCGACCATTGCTGCTGTGCAGAAAATGAAGCAGTTTCGTGAGGTTGCTGAGGAGCGTGGGATTCCAATGGAAGAATTATGGAAGTAA 891 0.569 MAATSLSSALNSLSSLSLFSRFSLLPPASLKPSSLLSRPLTLKSKSSDEIDTSFFDSVNPQDDITFNPPEPPEGFVPPPSFDDGPLETEDEIAAAYEELYGPGYSGVSVLGNDVYVMDAKVKKETGFGSGAKKEKIRDGFEERVVQVRRVTKVVKGGKQLRFRAVVVVGDKKGQVGVGVGKAKEVIAAVQKSAVNARRNIIKVPMTKYSTFPHRADGDYGAAKVMLRPASPGTGVIAGGSVRIVLEMAGVDNALGKQLGSNNALNNARATIAAVQKMKQFREVAEERGIPMEELWK 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1074 296 ProSiteProfiles S5 double stranded RNA-binding domain profile. 140 203 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed6g1074 296 PANTHER RIBOSOMAL S SUBUNIT 42 296 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed6g1074 296 Hamap 30S ribosomal protein S5 [rpsE]. 117 293 IPR005712 GO:0003735|GO:0006412|GO:0015935
Aed6g1074 296 TIGRFAM rpsE_bact: ribosomal protein uS5 139 293 IPR005712 GO:0003735|GO:0006412|GO:0015935
Aed6g1074 296 Pfam Ribosomal protein S5, C-terminal domain 217 287 IPR005324 GO:0003735|GO:0005840|GO:0006412
Aed6g1074 296 ProSitePatterns Ribosomal protein S5 signature. 157 189 IPR018192 -
Aed6g1074 296 SUPERFAMILY dsRNA-binding domain-like 136 205 - -
Aed6g1074 296 SUPERFAMILY Ribosomal protein S5 domain 2-like 210 288 IPR020568 -
Aed6g1074 296 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 42 296 - -
Aed6g1074 296 Gene3D - 126 201 - -
Aed6g1074 296 Gene3D - 206 295 IPR014721 -
Aed6g1074 296 Pfam Ribosomal protein S5, N-terminal domain 140 204 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1074 Aed-Chr6 15224047 15226939 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1074 140 280 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 32.215 1.86e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1074 K02988 - gmx:100820232 437.187