Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1066 ATGCCAGGGTTAACGTGCAACGCTTGCAACACGGAGTTCAAGGATGACACGGAGCAGAAGCTCCATTACAAGTCCGAGTGGCATCGCTACAATCTCAAGCGCAAGGTGGCTGGGGTTCCTGGGGTGACAGAAGCGCTATTTCTGGCTAGGCAATCTGTGCTTGCTCAAGAGAAAATGAGTGAAACCCCCATGCTCTATAGCTGTGGTCTTTGTGGAAAGGATTATAAAAGTTCCAAGGCTCATGCTGAGCACCTAAAATCACGTGGTCATATGATGCGGGCCTCTGAAGGAACTAGTACTGCAGATGAGAAGGCAATAATTAAGCCACTTCCACAGCGTGTTGTGAATAGACCTCCTCCTAGAAGAGAGGTAGACAACTCTGAAAATGAGGAAAGTGAAGATGAATGGGAGGAGGTTGATCCTGAAGATGATTTGGTTGATGGTGCTGCAAAGTCCTTGACTGATTTGAATGTGAATGAGCATGGTGAAAATGTTGATATGGATGAAGATGATGAGGATGATGATTTTGAGGACTTAGACCCTTCATGTTGCTTTATGTGTGATCAAGAGCACAAAACAATAGAAAACTGCATTGTTCACATGCACAAGCATCATGGATTCTTCATTCCCGATGTTGAGTATTTGAAGGATCCAAAAGGCTTCCTCACCTACCTTGGCCTTAAGGTCAGAAGGGACTACGTGTGTCTGTACTGCAATGATCAGTGTTATCCTTTCAGCAGCTTGGAAGCAGTCAGAAAACACATGGAAGCAAAAAGGCACTGTAAAGTGCATTTTGGTGATGGTGATGATGATGAGGAGGTAGAATTAGAAGAGTTCTATGATTATAGCAGCAGCTATGTGGATGATCAAGGCAAACAGCTTGTTGCATCTGGTGATGCATCTAACAACGTAGAACTTGTTGGTGGGTCTGAGCTCATAATCACTAGGAAATCTGGTGACAGAACATCAACCAAAACACTCGGCTCCCGTGAATATCTGCGGTATTATCGCCAGAAGCCTCGTCCATCACCAGCAAACATGGCCATCACTGCTGTGCTGGCTTCAAGGTACAGGAGCATGGGCTTGACCACTATCCAATCTAGGGAGAAAATTGTGAGGATGAAAGTGCTGAAGCAAATGCATAGGTCAGGTGTGGAGAATATGCGTAGCAGGATAGGTATGAAGAGTAATGTCATCAGGAACCTGCCAAACAATGTCCCATATTAG 1227 0.4507 MPGLTCNACNTEFKDDTEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSVLAQEKMSETPMLYSCGLCGKDYKSSKAHAEHLKSRGHMMRASEGTSTADEKAIIKPLPQRVVNRPPPRREVDNSENEESEDEWEEVDPEDDLVDGAAKSLTDLNVNEHGENVDMDEDDEDDDFEDLDPSCCFMCDQEHKTIENCIVHMHKHHGFFIPDVEYLKDPKGFLTYLGLKVRRDYVCLYCNDQCYPFSSLEAVRKHMEAKRHCKVHFGDGDDDEEVELEEFYDYSSSYVDDQGKQLVASGDASNNVELVGGSELIITRKSGDRTSTKTLGSREYLRYYRQKPRPSPANMAITAVLASRYRSMGLTTIQSREKIVRMKVLKQMHRSGVENMRSRIGMKSNVIRNLPNNVPY 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1066 408 PANTHER ZINC FINGER PROTEIN 622 1 408 IPR040025 -
Aed6g1066 408 SMART c2h2final6 233 260 IPR013087 -
Aed6g1066 408 SMART c2h2final6 4 28 IPR013087 -
Aed6g1066 408 SMART c2h2final6 182 204 IPR013087 -
Aed6g1066 408 SMART c2h2final6 66 90 IPR013087 -
Aed6g1066 408 MobiDBLite consensus disorder prediction 109 143 - -
Aed6g1066 408 MobiDBLite consensus disorder prediction 128 143 - -
Aed6g1066 408 PANTHER ZINC FINGER PROTEIN-RELATED 1 408 - -
Aed6g1066 408 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Aed6g1066 408 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Aed6g1066 408 ProSitePatterns Zinc finger C2H2 type domain signature. 68 90 IPR013087 -
Aed6g1066 408 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Aed6g1066 408 SUPERFAMILY beta-beta-alpha zinc fingers 168 240 IPR036236 -
Aed6g1066 408 Pfam C2H2 type zinc-finger (2 copies) 184 285 IPR041661 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1066 1 408 C2H2 Transcription Factor Family AT4G31420 65.060 0.0 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed6g1066 zf-C2H2_2 6.2e-25 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1066 K14816 - gmx:100796317 710.294