LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g1062	ATGCAATCACCAAACCAAATGCTATGTTTTCAGACACTAGAACAGCCAGAGTTGAAAATGTGTTCACATAGCCTCATTTTCCATGCTAACTTGTTTCTTCTTCTTCTGCTGCTAATAGTTTGTTGTCAAGCTCAACAACTTCGAGTTGATCACTACAGAGACACATGTCCAAATGTTGAGTCAATTGTACGCGGTGCGGTTGAAATGAAACTTCAGCAGACATTTGTGACAGCTCCAGCTACACTCAGGCTCTTCTTCCATGATTGTTTTGTTAGGGATAATCCTATCAATCTTTCACTAGCTGGTGATGGATTTGACACTGTGATCAAAGCCAAGGCTGCAGTTGACAATGTACCTGGCTGCCAGAATAAGGTTTCATGTGCTGACATATTGGCAATGGCAACTAGAGATGTCATAGCATTGCATTTGAATTCCTTGAACAATTTAGATGAACACCAAATGAACAACATTCACTTGGTTTTGCAGGCAGGAGGACCATCTTATGCAGTAGAGTTGGGAAGGCTAGATGGGAGAGTCTCAACAAAAGCCAGTGTTAGACACCATCTACCTCATCCTGAATTCAAACTAGAACAGCTGAACCAAATGTTTGCTTCACATGGCCTCACCCTAACCGATCTAGTTGCTCTATCAGGAGCACACACTATCGGGTTCTCTCACTGCAACCATGCCATGACAAAGCTTGGAAGGATTGGGATCAAAACGGGAAAAGAGGGTGAAATTAGACGTGATTGCTCAGTGATTCTTCTTTTTTGGAGGAGATTCCTATTTGGAACCAGTGGACAGCAAGAAAATGGAGAATGTGCAAGTGCAACTCAACTGCACTTTTTGCCAGAATTGTTCATAGAAAAGCACACCCACGCAAACCCAAAATGA	894	0.4251	MQSPNQMLCFQTLEQPELKMCSHSLIFHANLFLLLLLLIVCCQAQQLRVDHYRDTCPNVESIVRGAVEMKLQQTFVTAPATLRLFFHDCFVRDNPINLSLAGDGFDTVIKAKAAVDNVPGCQNKVSCADILAMATRDVIALHLNSLNNLDEHQMNNIHLVLQAGGPSYAVELGRLDGRVSTKASVRHHLPHPEFKLEQLNQMFASHGLTLTDLVALSGAHTIGFSHCNHAMTKLGRIGIKTGKEGEIRRDCSVILLFWRRFLFGTSGQQENGECASATQLHFLPELFIEKHTHANPK	297

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aed6g1062	297	ProSiteProfiles	Plant heme peroxidase family profile.	46	251	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Aed6g1062	297	PANTHER	-	157	229	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Aed6g1062	297	PANTHER	PEROXIDASE	230	254	-	-
Aed6g1062	297	PANTHER	PEROXIDASE	27	142	-	-
Aed6g1062	297	Gene3D	-	97	189	-	-
Aed6g1062	297	Gene3D	Peroxidase, domain 2	190	229	-	-
Aed6g1062	297	ProSitePatterns	Peroxidases proximal heme-ligand signature.	212	222	IPR019793	-
Aed6g1062	297	Pfam	Peroxidase	72	234	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Aed6g1062	297	SUPERFAMILY	Heme-dependent peroxidases	46	254	IPR010255	GO:0004601\|GO:0006979\|GO:0020037
Aed6g1062	297	PANTHER	-	230	254	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Aed6g1062	297	PANTHER	-	27	142	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Aed6g1062	297	ProSitePatterns	Peroxidases active site signature.	78	89	IPR019794	GO:0004601
Aed6g1062	297	Gene3D	-	47	93	-	-
Aed6g1062	297	PRINTS	Plant peroxidase signature	164	179	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Aed6g1062	297	PRINTS	Plant peroxidase signature	56	75	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Aed6g1062	297	PRINTS	Plant peroxidase signature	80	100	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Aed6g1062	297	PRINTS	Plant peroxidase signature	211	223	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Aed6g1062	297	PRINTS	Haem peroxidase superfamily signature	212	227	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Aed6g1062	297	PRINTS	Haem peroxidase superfamily signature	125	142	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Aed6g1062	297	PRINTS	Haem peroxidase superfamily signature	78	92	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Aed6g1062	297	PANTHER	PEROXIDASE	157	229	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g1062	Aed-Chr6	15067107	15070547	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed6g1062	42	255	Peroxidase	AT4G30170	54.386	1.60e-78	239

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed6g1062	K00430		-	gmx:100793327	314.694