Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1055 ATGGATGAGTATTCTGGTAAAAGAGGTGTAGATGGGATGGTATTCCCTAGAAAGGGGATGAGCCATGTATTTAGAGATACTGCTAATACTAGAGATCGAAACGGTCAAATTTGTAGCCGATTGGGTTGCAGTAGTAGAGCCAATCTTCCCAAAGTTGCTCAAGTCAGATCTTCTGAAAAAGGTAAATCTTTGAGGCCTTCACTCCAGTCCACTTCAAGTAGCAAGGAAGCAATTGGAAGTTCCTCTAGAACTACTAGTAACCCAGCAAAACGACTTATAGAACCTCGGAAAACTTCATCCTCTCGGTTTGAAGTAGATTCATCTGAAACTAGTAGTGTACAGGATGAACCAGAAGTTTCAGAGCTCATCCCTCCAACAGAAGAAACACGGAGAGGGCCTCAAGCTGAAGGGGAAAGTACAGAGTCTAGCAATGCGATATTGATGGAAGTACGAAGCTCCAATGCAGTATCAAATATTAGATCTCAAAGGAATTTAAATCAAAGACCTGGATTGCGTGCACAAGAAGTTAAAAGCACTGGTCCAGTGAGACATGCTGTTTCCAGCAGGTATGGGTTGAGGAACCTCAGATGCAACTCTATATCTGATGTCATCCCAGCTGGTTGTTCATCATCAGATTCAAGCCTTAATAGAAGGAAGGATACAATAAAAAATGGTAACTGTGAAGGGGGTAGTAGTTCCACCGTTAGAGGGAAAAATATCACCGGTTCTTCACAGGAAGGACGGAATTCTGGCTCCAGAAATGGCATATCAATATCTGATTCAAGAAGAACTAGAAATATTCCTTCTCAAAGGAACACCAGCATGGCATCCGTAAGAACTCAAAGACCAATTACTGGTCAAGCCAGGGGAAGGTTTTCTAGCCAAGGAAATGAAAACCCTGTGGCAACCAGTGAGTCCCCTGTTATTGTTCCCCTTTCACCTCATTCTGGTGATCTTGATGCTCCTGGCTTTTCATATCATACTTCTATGGAGACTTCTTTAAGTGGCTCAAACTCTTATGGTAGATCAGGCAATAGCAGTGAGCAGTTATTCAGTATTATGCCTGCGTCTCCTGCAGAAGATGACATCACTCATTCTCTACTAAATCGGGATAGCTTTCGACATTACAATATGGGTGGTATTGCAGAGGAGGAATATGTTGTTGGAGATGAAGTTGGGGGTCTGCAATGTGAACATAGATTTCATGTGGTTTGCATACAGGAGTGGCTACGGGTGAAGAACTGGTGCCCTATTTGTAAAGTATCTGCTGCAGCACTGTCCAATTCATCTTCACCACATTGA 1302 0.4286 MDEYSGKRGVDGMVFPRKGMSHVFRDTANTRDRNGQICSRLGCSSRANLPKVAQVRSSEKGKSLRPSLQSTSSSKEAIGSSSRTTSNPAKRLIEPRKTSSSRFEVDSSETSSVQDEPEVSELIPPTEETRRGPQAEGESTESSNAILMEVRSSNAVSNIRSQRNLNQRPGLRAQEVKSTGPVRHAVSSRYGLRNLRCNSISDVIPAGCSSSDSSLNRRKDTIKNGNCEGGSSSTVRGKNITGSSQEGRNSGSRNGISISDSRRTRNIPSQRNTSMASVRTQRPITGQARGRFSSQGNENPVATSESPVIVPLSPHSGDLDAPGFSYHTSMETSLSGSNSYGRSGNSSEQLFSIMPASPAEDDITHSLLNRDSFRHYNMGGIAEEEYVVGDEVGGLQCEHRFHVVCIQEWLRVKNWCPICKVSAAALSNSSSPH 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1055 433 MobiDBLite consensus disorder prediction 209 305 - -
Aed6g1055 433 MobiDBLite consensus disorder prediction 225 305 - -
Aed6g1055 433 MobiDBLite consensus disorder prediction 136 173 - -
Aed6g1055 433 SUPERFAMILY RING/U-box 384 423 - -
Aed6g1055 433 MobiDBLite consensus disorder prediction 1 182 - -
Aed6g1055 433 MobiDBLite consensus disorder prediction 60 94 - -
Aed6g1055 433 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 384 424 IPR045191 GO:0061630
Aed6g1055 433 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 383 IPR045191 GO:0061630
Aed6g1055 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 370 431 IPR013083 -
Aed6g1055 433 Pfam RING-H2 zinc finger domain 396 420 IPR024766 GO:0008270
Aed6g1055 433 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 384 424 - -
Aed6g1055 433 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1055 Aed-Chr6 15031420 15037398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1055 381 423 C3H Transcription Factor Family AT2G15530 55.814 3.15e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1055 - - gmx:100812055 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1055 6 15031420 15037398 Aed6g1055 6 15031420 15037398 ECH
Aed6g1055 6 15031420 15037398 Aed7g2385 7 25825053 25829385 PCT