Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1042 ATGTCTCGCGTGTATGTTGGTAACTTGGATTCACGAGTCACCGAGAGAGATCTCGAAGACGAATTCCGTGTTTTCGGAGTTATTCGAAGTGTTTGGGTTGCACGTAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGATGCACAGGATGCTATCCGTGAATTGGATGGAGTAACAGTCCTCGTGGGAGGTCCCCTAGGCGCCGCAGTTTGTCACCTCGTGGACGTAGTTACAGCAGGTCACCTCCTTATCGTGGACGTGAGGAGGTTCCATATGCTAATGGAAATGGCCTTAGGGATCGACGCAGAAGCAGAAGTTGATTTTTGA 336 0.4911 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGVTVLVGGPLGAAVCHLVDVVTAGHLLIVDVRRFHMLMEMALGIDAEAEVDF 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1042 111 SMART rrm1_1 3 72 IPR000504 GO:0003723
Aed6g1042 111 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 69 IPR000504 GO:0003723
Aed6g1042 111 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 60 - -
Aed6g1042 111 SUPERFAMILY RNA-binding domain, RBD 3 63 IPR035979 GO:0003676
Aed6g1042 111 CDD RRM_SRSF3_like 3 60 - -
Aed6g1042 111 Gene3D - 2 69 IPR012677 -
Aed6g1042 111 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Aed6g1042 111 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ21 2 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1042 Aed-Chr6 14806479 14810071 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1042 2 75 Eukaryotic Initiation Factors Gene Family AT4G34110 35.443 5.92e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1042 K12896 - gmx:100796961 124.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1042 6 14806479 14810071 Aed6g1042 6 14806479 14810071 ECH