Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1023 ATGGAAGGGACTCATCATGATCATGATGATGAGAAGGAGGAAACCCTACCACCAGGATTTAGGTTTCATCCCACCGATGAAGAACTCATCTCTTACTATCTCACAAACAAGATTTCAGATTCTAATTTCACAGGGAAAGCAATAGGTGATGTAGATCTCAACAAATGCGAGCCATGGGAGCTTCCGGATCTTGGTCTAATTTCCATACATGCTGTTCTGAAAATAGTCAACGCCATGTATCTAGGCACACTACATATACAGCAGGATGAATGGGTGGTTTGCCGTGTGTTCCGCAAGAGTGCTGGTGCAAAAAAGTTCCCAACTTCCAACAACCACACCAGAGCCTTGAATATTCCCTATAATGATCTTGAAGTTTCATGCCCTAGCATTAACAATGTGCCACCACCGAATCCAATGATGCACCACCTTGCAGCAGATCCTGCTGCTGCTGCTGCTCAATATTTCCACCTTTATGGAAGATACATGATGATGAGCCCTTCAGATCAGGTAGCTGAAGTCACAAGGGTCTTCAGTAGTAGCAGAGGTGGTGGATCATCCACAAGCTCTGTGAATAATGTTATGAACATGAACGTGAACATGAACCTACCAATTGCAATGCAGTACTCTCATTTTAACAACAACCCAGTGGCAGGAGAAGCAAAAGGGTTCAGCATTTCTGGCCTTAATTTGAATCTGGGAGGAGCTGGAGGAACAGTTGCCACTACCACCACACAAGCATCACAACCCCTTTTGAGGCCAATGATGCCACCATCTCCTGCTCACACTCACACAATGGCTCAAGTACTGCATCATGATTTCATCACTTCCAACATGATGACACCACCCAATGTTAATGCTCTTGCTGCAAACAATGTCGTAGGGTATAGTACTGCAGATATGAGCAGTGCAAATTCTCATGGCAATAGGTACATGGGCAATTCCGCAAGTTCCAAAGAGGCGGTCAACAACCTTCCTTTGTCACGGACAATCACAATGTTGCTATTAAGACATGATGCCGCCATAACCGACCACAACGCCACTGCACACAAGCATGTTGTCGCTGCACACGACCACATCGTTGTTGTGCACGACCACAAGCAAGGCTTCCTATAG 1113 0.4555 MEGTHHDHDDEKEETLPPGFRFHPTDEELISYYLTNKISDSNFTGKAIGDVDLNKCEPWELPDLGLISIHAVLKIVNAMYLGTLHIQQDEWVVCRVFRKSAGAKKFPTSNNHTRALNIPYNDLEVSCPSINNVPPPNPMMHHLAADPAAAAAQYFHLYGRYMMMSPSDQVAEVTRVFSSSRGGGSSTSSVNNVMNMNVNMNLPIAMQYSHFNNNPVAGEAKGFSISGLNLNLGGAGGTVATTTTQASQPLLRPMMPPSPAHTHTMAQVLHHDFITSNMMTPPNVNALAANNVVGYSTADMSSANSHGNRYMGNSASSKEAVNNLPLSRTITMLLLRHDAAITDHNATAHKHVVAAHDHIVVVHDHKQGFL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1023 370 MobiDBLite consensus disorder prediction 1 20 - -
Aed6g1023 370 Pfam No apical meristem (NAM) protein 17 64 IPR003441 GO:0003677|GO:0006355
Aed6g1023 370 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 87 313 - -
Aed6g1023 370 Gene3D NAC domain 25 71 IPR036093 GO:0003677|GO:0006355
Aed6g1023 370 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 87 313 - -
Aed6g1023 370 ProSiteProfiles NAC domain profile. 16 179 IPR003441 GO:0003677|GO:0006355
Aed6g1023 370 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 63 - -
Aed6g1023 370 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 8 63 - -
Aed6g1023 370 SUPERFAMILY NAC domain 14 64 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1023 Aed-Chr6 14354313 14358102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1023 2 63 NAC Transcription Factor Family AT2G24430 77.419 1.74e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed6g1023 NAM 5.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1023 - - gmx:100811175 171.4