Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1004 ATGCGAATCGCTTCGATCTTCTTCGGCACTTCGCTAAGGAGGACTACTGGCCCTACAAGGCGTTCTACGAAAGGGCAATGGACATCAGAGGAGGATGATATCTTACGGGACGCTGTTGAGAGGTTTAAAGGAAAAAATTGGAAAAAAATTGCGGAATGTTTCAAGGATAGAACTGATGTGCAATGCCTACATAGGTGGCAGAAAGTTTTAAATCCTGAACTTGTTAAAGGTCCATGGTCTAAAGAGGAAGATGAAATAATTATTGAATTGGTGAAAAACAATGGGCCTAAAAAGTGGTCATTTATTGCACAACATTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGTATAAAAAAGGAAGCATGGACTCAGGAAGAGGAGTTGGCTCTAATAAAGTATCATCAGATTTTTGGGAACAAGTGGGCTGAATTGTCAAAGGTCATTCCTGGAAGGACAGACAATGCTATTAAAAATCACTGGAACAGTTCTGTCAAAAAGAAATTGGATTCTTATTTGGCATCAGGCTTGCTTACTCAGTTTGAATCTGTACCTCCTCATGTTGGAAATTTGAATCAATCAACAAGGTTGCAGTGTAGTGGAGATGATAATGTTCCCAAGACTGAAGGAGAGGAAGTTTCAGAGTGCAGCCAAGGTTCAGCTAATGCTGTTGTTTGCTTTCCATCTGCTACAGGGATGAACAGTGCTGACTTACAAACTGGAGAGGCATATAGGACAAATGCAGAATGTAGTCTTGGAAAGGATCATAGTCCAAGTCGAGCATCTTGTTCAGAGCCATATTATGTATCAATTGATGATGTTACTATATGCATCCCAGAAATTGCTCACCAAGAGGCTTGCACTTCTCAATTCGTTGAGCAACAGTCACATGAACTTAGTGGGGATTGCCAGTTCAATTTACATTCCTTACCCAATATTTCATCAATGGTCTTGGGGCAGGAATCCTTGCAGTTGCAAAGAGATTGTATAGCTCCTAGTGAAATCTGTGACATGGTGAATATTCCATTTCAGTCTTCAGTGGAGTTAAGTGTTTCAACATCTATGGATTCTCTTAAACCAGAGCACATGTTGATATCTGATGATGAATGTTGCAGAGTCCTGTTTTCAGATGCAATGACTGATGGGTGTTTTAATCCTATAGATTATAATAAAGGTGATATAGTTGAATTTTCTGGATGCACTTCATTTCCTTGTCAACCTTGTAATATCCAGATATCTGAAACTGGTGGAACCTCAACTCCACAGTTATCTTGTCCTCAGTGTTCTAATAATTGTATAGGAATTTCATCCTCCCAACCTGTCCCTCCAGGATTTTCTGCTAGTGATGATAAGATGGGGCCTACTGCCAATGGCAATCAATTATTTGGGATGGAGGATCACCACTTTGTCTCCAGAGAACCTACTAACTTCACTTATGTCAATGACATATCCAGTTCTCCTTGTGTTGATGGTATAGGTAGTAGTGCAGTAATGGAAGAGCCACATGATATTCTGAAGGGCACATCAAAACTGGTCCCTGTAAATAGTTTTGGTGGTGGATCAGATGCCAAACAAACTAGTAATCCAACAGATGGAAAAACAAATGTGCATACAGAAAAGGAGAACTCGGGATCTCTATGTTATGAACCTCCCCGTTTTCCAAGTTTGGATATTCCTTTCTTCAGCTGTGATCTTGTACAATCTGGGAGTGATATGCAGCAAGAGTTTAGTCCCTTGGGTATCCGCCAGTTTATGATGTCATCTGTGAACTGTCTTTCTCCTTTCAGGTTGTGGGACTCACCCTCTCGTGATGATAGTCCAGATGCATTGTTAAAAAGTGCAGCTAAAACTTTTACAGGTACACCATCCATATTAAAGAAACGACACCGAGATCTGTTGTCACCACTCTCAGATAAAAGGATTGATAAGAAACTTGGGACTGACATGACATCATCTACATTTAGCAAAAATTTATCCAGTTCCAATGTCATGTTTGGTAACAATGAGACTCGAGAAGCAGATATGCCAGCATATTCATCATCATTGCAAAAACAGAACAGCATGGCATCTGTTGATGAGGACAATAAAGAAAATTGTGGAAAAGCTTATAAAGGGGAACAAGCAATGGAGCCAATTAAATCTGCAATTTTGGATGAAAATAACTCTCAAAAAGATACTGTTGACAGTAATTATCAGCATAATGTCAAGCAAGAACCTCTTGATTCTAAAATGAAGATTGATGCAGCTGTTGAGATTGATCAACAACCATCTGGAGTTTTGGATGAACATGATGTGAATGACCTGTCACTGTCTTCTCCTGATCAAGTTGGTTTAAAATCAATCAGAGGTCCAGGATCAAGTGCTAAAACTCCCAAAAGCTTGAACAAGTCCTTGGAAGCGGCTCCAAATCAGAGCAGCCATTTGAAATCATCTAATAAAAATTCGTGTTCAAGGGTTAATTCATGTTCTCCTTGTGTTCGGTCAAAGGAGCATGAAGGACTTTCAGTTGCTGTTACTCGTGTACAAGCTCCAGGGGAACAAACCAGAAAAGATGGTGGTTTTGAAACATGTAGCATCTTTGGTGGAACACCTTTTAGGAAAAGCCTTGAATCACCTTCTGCATGGAAATCCCCTTGGTTCTTCAACACTTTTCTATCTAGCCCCAGGATTGACACCGAAATTACAATTGAGGATTTTGGGTATTTTATGAGCCCAGGTGATAGAAGCTATGATGCAATCGGGTTGTTGAAGCAGATCAGTGAACAAACTGCTGCCACATATGCCAATGCTCAGGAGATTTTAGGAAATGAAACTCCTAAGGCGATACCAAAAGATGCATCTGAAAACAACAAGGATATGGACCATGAAAATAATGATCCTGCCAATCAACCTGGGAACCATTCTCAGTTGGTTTCAAATGCTTTGATAGAGCGACGCACACTTGACTTTAGTGAATGTGAAACACCAGACAAGGGTAAGGGTGATAGCAGCAAATCCTCAGCTATGAGCTTCTCAAGCCCTTCTTCGTATTTGATGAAAGGTTGTAGATGA 3051 0.4025 MRIASIFFGTSLRRTTGPTRRSTKGQWTSEEDDILRDAVERFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIELVKNNGPKKWSFIAQHLPGRIGKQCRESIKKEAWTQEEELALIKYHQIFGNKWAELSKVIPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQFESVPPHVGNLNQSTRLQCSGDDNVPKTEGEEVSECSQGSANAVVCFPSATGMNSADLQTGEAYRTNAECSLGKDHSPSRASCSEPYYVSIDDVTICIPEIAHQEACTSQFVEQQSHELSGDCQFNLHSLPNISSMVLGQESLQLQRDCIAPSEICDMVNIPFQSSVELSVSTSMDSLKPEHMLISDDECCRVLFSDAMTDGCFNPIDYNKGDIVEFSGCTSFPCQPCNIQISETGGTSTPQLSCPQCSNNCIGISSSQPVPPGFSASDDKMGPTANGNQLFGMEDHHFVSREPTNFTYVNDISSSPCVDGIGSSAVMEEPHDILKGTSKLVPVNSFGGGSDAKQTSNPTDGKTNVHTEKENSGSLCYEPPRFPSLDIPFFSCDLVQSGSDMQQEFSPLGIRQFMMSSVNCLSPFRLWDSPSRDDSPDALLKSAAKTFTGTPSILKKRHRDLLSPLSDKRIDKKLGTDMTSSTFSKNLSSSNVMFGNNETREADMPAYSSSLQKQNSMASVDEDNKENCGKAYKGEQAMEPIKSAILDENNSQKDTVDSNYQHNVKQEPLDSKMKIDAAVEIDQQPSGVLDEHDVNDLSLSSPDQVGLKSIRGPGSSAKTPKSLNKSLEAAPNQSSHLKSSNKNSCSRVNSCSPCVRSKEHEGLSVAVTRVQAPGEQTRKDGGFETCSIFGGTPFRKSLESPSAWKSPWFFNTFLSSPRIDTEITIEDFGYFMSPGDRSYDAIGLLKQISEQTAATYANAQEILGNETPKAIPKDASENNKDMDHENNDPANQPGNHSQLVSNALIERRTLDFSECETPDKGKGDSSKSSAMSFSSPSSYLMKGCR 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1004 1016 Pfam Myb-like DNA-binding domain 120 162 IPR001005 -
Aed6g1004 1016 MobiDBLite consensus disorder prediction 519 533 - -
Aed6g1004 1016 MobiDBLite consensus disorder prediction 995 1010 - -
Aed6g1004 1016 Gene3D - 122 180 - -
Aed6g1004 1016 MobiDBLite consensus disorder prediction 935 1016 - -
Aed6g1004 1016 Gene3D - 23 75 - -
Aed6g1004 1016 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 114 IPR017930 -
Aed6g1004 1016 MobiDBLite consensus disorder prediction 980 994 - -
Aed6g1004 1016 PANTHER TRANSCRIPTION REPRESSOR MYB5 14 1015 - -
Aed6g1004 1016 Gene3D - 76 117 - -
Aed6g1004 1016 MobiDBLite consensus disorder prediction 786 822 - -
Aed6g1004 1016 ProSiteProfiles Myb-like domain profile. 71 116 IPR001005 -
Aed6g1004 1016 ProSiteProfiles Myb-like domain profile. 19 70 IPR001005 -
Aed6g1004 1016 MobiDBLite consensus disorder prediction 756 822 - -
Aed6g1004 1016 Pfam Myb-like DNA-binding domain 27 85 - -
Aed6g1004 1016 PANTHER MYB PROTEIN-RELATED 14 1015 - -
Aed6g1004 1016 CDD SANT 122 162 IPR001005 -
Aed6g1004 1016 SMART sant 23 72 IPR001005 -
Aed6g1004 1016 SMART sant 75 118 IPR001005 -
Aed6g1004 1016 SMART sant 119 167 IPR001005 -
Aed6g1004 1016 MobiDBLite consensus disorder prediction 959 975 - -
Aed6g1004 1016 MobiDBLite consensus disorder prediction 721 737 - -
Aed6g1004 1016 MobiDBLite consensus disorder prediction 944 958 - -
Aed6g1004 1016 CDD SANT 27 70 IPR001005 -
Aed6g1004 1016 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 74 IPR017930 -
Aed6g1004 1016 SUPERFAMILY Homeodomain-like 25 80 IPR009057 -
Aed6g1004 1016 MobiDBLite consensus disorder prediction 721 742 - -
Aed6g1004 1016 CDD SANT 78 116 IPR001005 -
Aed6g1004 1016 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 169 IPR017930 -
Aed6g1004 1016 SUPERFAMILY Homeodomain-like 73 161 IPR009057 -
Aed6g1004 1016 MobiDBLite consensus disorder prediction 516 545 - -
Aed6g1004 1016 ProSiteProfiles Myb-like domain profile. 119 165 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1004 Aed-Chr6 13751645 13762122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1004 14 1016 MYB Transcription Factor Family AT4G32730 42.857 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed6g1004 Myb_DNA-bind_6 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1004 - K09420 gmx:100794559 1658.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1004 6 13751645 13762122 Aed6g1004 6 13751645 13762122 ECH
Aed6g1004 6 13751645 13762122 Aed7g2342 7 25512699 25518958 PCT