Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0981 ATGGAATCACCCAACTCTTCCCCAATTTTCCCACAATTCGCCTTCGACACCAACAAGAACAAGAACAACAACCCCGACCAATTCATCATCGAGGACCTCTTGGACTTTTCCAACGACGAGGTTGTCATCGCCGACGCCACTTTCGACTCCGCCACCACCGACTCTTCCACGGTCACTACCACTGTTGAGAGCTGCAACTCCTCCTCCTTCTCCGGTGGCTCCGACCCCAATACCTTCCCCGATATCGGTAGCCGGAATCTCTCCGACGGCCATTTCTCCGGTGAACTCTGCGTTCCGCAGTATGATGACATAGCGGAGCTAGAATGGCTTTCGAATTTCGTGGAGGAGTCGTTTTCGAGCGAGGACCTGCAGAAGATGCAGCTCATATCAGGCATGAATGCTCGAAACGACGACGTTTCAGAGGCCCGCGAGTTCCACTGCGAGCCCACCAGAAGCGGGATCCACACTACCGAGCCCACCAGAAGCGGCGGCGGGTTCCACTCCGAGCCCACCAGAAGCAGCCCAATATTCAATTTGGAAGTGTCGGTTCCAGCCAAGGCCCGCAGCAAGAGGTCCCGCGGGCCCCCATGCAACTGGGCCTCGCGTCTCCTGGTCCTGTCCCCATCCACCTCGTCGTCTTCGGACTCCTCCGAGATCGTCGTCCCTCCCGCCGTCGTTACCACTGATTCTAGCAAGGCTCCCGCAAAAAAGCTTGTGAAGGCCATGCCGCGGAAGAAGGACAGCGGCAGCGACGGCAGCGGCGGGGACGGGCGTCGGTGCCTTCACTGTGCCACTGACAAAACCCCACAATGGCGGACAGGGCCCATGGGCCCAAAGACTTTGTGCAACGCTTGTGGCGTGAGGTACAAGTCAGGCCGGCTTGTGCCCGAGTACAGGCCCGCGGCCAGTCCGACTTTTGTTTTGACTAAGCACTCCAACTCGCACCGCAAGGTGCTGGAGCTGCGAAGGCAGAAGGAAATGGTGCGGGCCCAGCACCCGCAGCAACCACAGTTCCTACAACAACACCATCATCAGCAACAACATCACCATCATCAACAACATCAACAGAACATGATGTTCGATGTATCCAACGGTGATGATTACTTGATCCACCAACACGTGGGCCCCGATTTCAGGCAGCATATCTAG 1149 0.5727 MESPNSSPIFPQFAFDTNKNKNNNPDQFIIEDLLDFSNDEVVIADATFDSATTDSSTVTTTVESCNSSSFSGGSDPNTFPDIGSRNLSDGHFSGELCVPQYDDIAELEWLSNFVEESFSSEDLQKMQLISGMNARNDDVSEAREFHCEPTRSGIHTTEPTRSGGGFHSEPTRSSPIFNLEVSVPAKARSKRSRGPPCNWASRLLVLSPSTSSSSDSSEIVVPPAVVTTDSSKAPAKKLVKAMPRKKDSGSDGSGGDGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRAQHPQQPQFLQQHHHQQQHHHHQQHQQNMMFDVSNGDDYLIHQHVGPDFRQHI 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0981 382 ProSitePatterns GATA-type zinc finger domain. 260 285 IPR000679 GO:0006355|GO:0043565
Aed6g0981 382 MobiDBLite consensus disorder prediction 153 177 - -
Aed6g0981 382 PIRSF Txn_fac_GATA_plant 11 356 IPR016679 GO:0003677|GO:0005634|GO:0045893
Aed6g0981 382 Gene3D - 255 304 IPR013088 GO:0006355|GO:0008270
Aed6g0981 382 MobiDBLite consensus disorder prediction 332 355 - -
Aed6g0981 382 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 255 318 - -
Aed6g0981 382 ProSiteProfiles GATA-type zinc finger domain profile. 254 290 IPR000679 GO:0006355|GO:0043565
Aed6g0981 382 MobiDBLite consensus disorder prediction 235 259 - -
Aed6g0981 382 PANTHER GATA TRANSCRIPTION FACTOR 16 382 - -
Aed6g0981 382 SMART GATA_3 254 304 IPR000679 GO:0006355|GO:0043565
Aed6g0981 382 MobiDBLite consensus disorder prediction 148 177 - -
Aed6g0981 382 PANTHER GATA TRANSCRIPTION FACTOR 16 382 - -
Aed6g0981 382 CDD ZnF_GATA 259 306 IPR000679 GO:0006355|GO:0043565
Aed6g0981 382 Pfam GATA zinc finger 260 293 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0981 Aed-Chr6 13007788 13009528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0981 28 382 C2C2-Gata Transcription Factor Family AT5G25830 50.541 8.51e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed6g0981 GATA 3.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0981 - - gmx:100800146 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0981 6 13007788 13009528 Aed6g0981 6 13007788 13009528 ECH