Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0972 GCCTCTGTCTCACCACTATGTGATAACAATTCTGCCAACAGGTTGTATGGTGGCAGATCATATGGTGTTTCACGACGTGGCGTCCGTGGTAATTTTGTTCCCCCTATTAAATCCAATGGGAACAATACTGGAAATATGAGTGCACGCATAGCTGGAAAATGTGATGATTCTTTAGATGACTCTACAAAGAAATGTCTGGAAATCCTGTGTGGTCCTGATGGCGAGCTTCCTGAGAAATTGAGGAATTTGGAACCTCGCCTCATTGAACATGTTAGTAACGAGATTATGGATAGAGATCCCAATGTCCAGTGGGATGATATTGCTGGATTGGAGCATGTCAAGAAATGTGTCAATGAGATGGTCGTATATCCTCTGCAACGTCCTGACATATTCCAGGGCTGTCGTTCCCCTGGGAGGGGTCTTCTTCTGTTTGGTCCCCCAGGAACTGGTAAAACAATGATAGGAAAAGCCATAGCAGGGGAGGCGAAGGCAACCTTCTTTTATATATCCGCAAGTTCGTTGACTAGCAAGTGGGTTGGTGAAGGCGAAAAGCTAGTAAGAGCCCTTTTCGGAGTTGCCAGTTGTCGTCAGCCAGCAGTAATTTTTGTTGATGGAATAGATTCGCTCCTGTCTCAGCGTAAATCAGATGGTGAGCATGAATCAAGTAGACGGCTAAAGACGCAGTTTCTCATCAAAATGGAAGACTTTGACAGTGGTAGCGAGCAAATTCTGCTTATAGGGGCAACAAATCGTCCCCAAGAGCTTGATGAAGCAGCACGAAGGAGCTTACTAAAAGACTTTATATTCCCCTACCTTGCTCAGAGAGATGGATTATTCAAGCTATCAAGCGAGGAAATTGATATCGTATGCAAATTAACAGAAGGTGTGAACTTCTATTTTTTTCAAGACTTCAAGAATTCCCTACAAGAGGTGCGGCCATCTGTTTCCCCAAATGAACTTGGAACTTATGAACAATGGAACAAGCAATTTGGAAGCCTATCACTATAG 1008 0.4385 ASVSPLCDNNSANRLYGGRSYGVSRRGVRGNFVPPIKSNGNNTGNMSARIAGKCDDSLDDSTKKCLEILCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPNVQWDDIAGLEHVKKCVNEMVVYPLQRPDIFQGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWVGEGEKLVRALFGVASCRQPAVIFVDGIDSLLSQRKSDGEHESSRRLKTQFLIKMEDFDSGSEQILLIGATNRPQELDEAARRSLLKDFIFPYLAQRDGLFKLSSEEIDIVCKLTEGVNFYFFQDFKNSLQEVRPSVSPNELGTYEQWNKQFGSLSL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0972 335 PANTHER AAA DOMAIN-CONTAINING 301 332 - -
Aed6g0972 335 ProSitePatterns AAA-protein family signature. 243 261 IPR003960 GO:0005524|GO:0016887
Aed6g0972 335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 293 IPR027417 -
Aed6g0972 335 CDD AAA 134 271 - -
Aed6g0972 335 Pfam ATPase family associated with various cellular activities (AAA) 141 263 IPR003959 GO:0005524|GO:0016887
Aed6g0972 335 Gene3D - 100 271 IPR027417 -
Aed6g0972 335 PANTHER FIDGETIN-LIKE PROTEIN 1 10 295 - -
Aed6g0972 335 PANTHER FIDGETIN-LIKE PROTEIN 1 301 332 - -
Aed6g0972 335 Pfam Vps4 C terminal oligomerisation domain 301 331 IPR015415 -
Aed6g0972 335 PANTHER AAA DOMAIN-CONTAINING 10 295 - -
Aed6g0972 335 SMART AAA_5 137 275 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0972 Aed-Chr6 12585290 12588528 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0972 56 261 Calmodulin-binding Proteins AT3G56690 35.945 6.64e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0972 K22766 - gmx:100789161 568.155