Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0938 ATGGGTCGTTTATCTGAGTCGAAGTTGCTGCAGGAGCTAGTTCTGTACGCAGCTAGCGCAGCGCTGAGTAGCTTGGTCTTATTCGTGGGCCTCCGACAGCTCGACCCGAATCGCGAGGCTTCGAAAAAGGCCCTTCTCCACAAAAAAGAGATTGCCAAGCGCCTCGGTCGTCCTCTTGTTCAGACTAATCCTTATGAGGATGTCATAGCATGCGATGTTATCAATCCTGACAACATTGATGTGGAGTTTAACTCTATTGGGGGACTGGAAACTATAAAACAAGCTCTGTTTGAGCTTGTTATTCTTCCTTTAAAAAGACCCAACTTGTTTTCTCATGGTAAGCTTCTTGGGCCACAAAAGGGTGTCCTGTTGTATGGACCACCTGGCACGGGGAAGACCATGCTTGCCAAAGCTATTGCTAAGGAGTCTAGAGCAGTTTTCATTAATGTGAGGATATCAAACCTGATGAGCAAGTGGTTTGGAGATGCCCAGAAACTTGTGGCTGCCGTATTTAGCCTAGCCCATAAGCTCCAGCCTGCCATCATATTCATTGATGAAGTTGACAGCTTTTTGGGTCAGCGCCGTACAACAGATCATGAGGCTTTGTTAAACATGAAAACTGAATTCATGGCTTTATGGGATGGATTTACTACTGATCAGAATGCTCAAGTTATGGTCCTTGCTGCAACTAATCGTCCTTCAGAACTTGATGAAGCGATACTTCGACGTCTTCCTCAAGCATTTGAAATTGGTATTCCAGACCGAAGAGAGAGGGCTGACATATTGAAGGTTATTTTGAAGGGTGAGAAGGTTGAAGAAAACATTGACTTTGACCATATAGCCTACTTATGTGAAGGTTACACTGGTTCGGATCTATTTGACCTCTGCAAGAAAGCTGCCTATTTTCCAATTAGAGAACTGCTGGATGAAGAGAAGAAAGGGAGAAGTTCTTCTGCTCCTAGACCATTGTCCCAGTTAGACTTCGAGAAGGCCCTCACCACTTCGCGGAAGACTACGGTTGCTGCATTTGAATACAACGGATTGAGTGCAGATGCTCTAAGATGGACAGGACACAGGGAACCGGCAGGTGATTATCAGGTTCAAGCTGCAATCAATGAACTCTCTAAGTTTGTGGCTTCTCACATGATTAACCGCCAGCCAGATGCCCAAGATCTTTGA 1179 0.4538 MGRLSESKLLQELVLYAASAALSSLVLFVGLRQLDPNREASKKALLHKKEIAKRLGRPLVQTNPYEDVIACDVINPDNIDVEFNSIGGLETIKQALFELVILPLKRPNLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESRAVFINVRISNLMSKWFGDAQKLVAAVFSLAHKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNAQVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERADILKVILKGEKVEENIDFDHIAYLCEGYTGSDLFDLCKKAAYFPIRELLDEEKKGRSSSAPRPLSQLDFEKALTTSRKTTVAAFEYNGLSADALRWTGHREPAGDYQVQAAINELSKFVASHMINRQPDAQDL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0938 392 CDD AAA 116 251 - -
Aed6g0938 392 SMART AAA_5 118 254 IPR003593 -
Aed6g0938 392 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Aed6g0938 392 Gene3D - 80 339 IPR027417 -
Aed6g0938 392 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 2 347 - -
Aed6g0938 392 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Aed6g0938 392 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 2 347 - -
Aed6g0938 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 311 IPR027417 -
Aed6g0938 392 Pfam AAA+ lid domain 274 310 IPR041569 -
Aed6g0938 392 Gene3D - 253 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0938 Aed-Chr6 11467483 11478255 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0938 39 325 Calmodulin-binding Proteins AT3G56690 33.333 1.84e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0938 K22530 - gmx:100791694 706.057