Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0916 ATGCTATGTTTAATTTTGAAGTTTTGTATGCTCTCCGTTTTCGGGCGGGCCACTGGCGGGTCGGACTTGAATCCGACGGGTCGGGCTCGAACCCGTCGGTCCAACCCGCATTACCACCCGCCCCACCCCTCTAGTATATATTATAAAGCTCCCTCTTTCCCGCCACTGCAGAGTGTGTGTTCCTTCTCAGCAGCGATAACAACATTGAACAATAGAAGAAACACAAGAGCCAAAACAACGCTTAACACTATGCTGTGGGTGGACAAATATCGTCCCAAAACCCTGGACCAGGTTATGGTCCACTCCGACATCGCTCATAATCTCAAGAAATTGGTAACGGAACAGGATTGCCCCCATTTACTCTTCAATGGCCCGTCTGGCTCTGGCAAGAAAACCCTAATCATGGCTCTTCTCCGCCAAATGTTCGGACCCGGTGCTGAAAAGGTGAAGGTGGAAAATAGGAACTGGAAAGTGGATGCTGGGAGTAGATCTATTGATATAGAGCTGACAACATTATCAAGTGCCAACCACATTGAAATGAGTCCAAGTGATGCTGGATTTCAGGATAGATACATTGTTCAGGAAGTAATCAAAGAACTGGCTAAGAATAGACCCATTGATACCAAGGGGAAGAAAGGATTTAGAGTACTTGTGCTCAATGATGTTGACAAACTCTCTAGAGAAGCCCAACATTCTCTCCGCAGAACAATGGAGAAATACAGTTCTTATTGCAGATTAATTCTATGTTGCAATAGTTCTTCTAGAGTCACAGAAGCAATCCGCTCTCGATGTCTCAATGTGCGAATAAATGCACCAAGTGAAGAACAGATTGTTGAAGTTTTAGATTTCATTGGTAAGAAAGAAGGACTGCAAATTCCTCCTGGTTTTGCTGCTCGCATTGCGGAGAAATCAAATCGAAATTTAAGGAGGGCCATATTATCATTTGAGACTTGTCGTGTCCAACAGTATCCTTTCACTAACAAACAATTAATTTCTCCAATGGACTGGGAAGAGTATATTTCTGAAATTGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGGTTGTTTCAAGTTCGAGGAAAGCTCTATGATCTGCTAATCAATTGCATTCCTCCGGAGATCATTTTGAAGAGGCTTCTTTATGAGCTATTGAGGAAACTGGATGCAGAACTAAAGCATGAAGTATGTCATTGGGCTGCATATTATGAACATAGGATGTGTCTTGGACAGAAAGCAATCTTTCACATTGAAGCATTTGTGGCCAAGTTCATGAGTATTTACAAATCCTTCCTTATTGCAACATTCGGCTGA 1314 0.4285 MLCLILKFCMLSVFGRATGGSDLNPTGRARTRRSNPHYHPPHPSSIYYKAPSFPPLQSVCSFSAAITTLNNRRNTRAKTTLNTMLWVDKYRPKTLDQVMVHSDIAHNLKKLVTEQDCPHLLFNGPSGSGKKTLIMALLRQMFGPGAEKVKVENRNWKVDAGSRSIDIELTTLSSANHIEMSPSDAGFQDRYIVQEVIKELAKNRPIDTKGKKGFRVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQIVEVLDFIGKKEGLQIPPGFAARIAEKSNRNLRRAILSFETCRVQQYPFTNKQLISPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYDLLINCIPPEIILKRLLYELLRKLDAELKHEVCHWAAYYEHRMCLGQKAIFHIEAFVAKFMSIYKSFLIATFG 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0916 437 Gene3D - 83 272 IPR027417 -
Aed6g0916 437 PANTHER REPLICATION FACTOR C SUBUNIT 3 85 429 - -
Aed6g0916 437 CDD HLD_clamp_RFC 272 340 - -
Aed6g0916 437 Gene3D - 273 333 - -
Aed6g0916 437 Gene3D - 335 428 - -
Aed6g0916 437 SMART AAA_5 116 275 IPR003593 -
Aed6g0916 437 MobiDBLite consensus disorder prediction 21 41 - -
Aed6g0916 437 SUPERFAMILY post-AAA+ oligomerization domain-like 334 429 IPR008921 GO:0003677|GO:0006260
Aed6g0916 437 Pfam DNA polymerase III, delta subunit 103 271 - -
Aed6g0916 437 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 85 429 - -
Aed6g0916 437 CDD AAA 118 273 - -
Aed6g0916 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 323 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0916 Aed-Chr6 10201181 10208246 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0916 84 437 Core DNA Replication Machinery Family AT5G27740 83.333 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0916 K10756 - gmx:100818329 663.685