Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0893 ATGGGTAAGGAAAAGGTTCACATCAGTATTGTGGTCATTGGCCATGTCGACTCTGGGAAGTCCACCACCACTGGGCACTTGATCTACAAGCTTGGAGGCATTGACAAGCGTGTCATCGAGAGATTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCTTTCAAGTATGCTTGGGTTCTTGACAAGCTTAAGGCTGAGCGTGAAAGAGGAATCACCATTGATATTGCCTTGTGGAAGTTTGAAACCACCAAGTACTATTGCACAGTCATCGATGCCCCTGGACACAGGGATTTCATTAAGAACATGATTACTGGAACATCCCAGGCTGACTGTGCTGTTCTTATTATCGATTCCACTACTGGTGGTTTCGAAGCTGGAATTTCCAAGGATGGACAGACTCGTGAGCATGCTCTTCTGTCCTTCACTCTTGGTGTGAAGCAGATGATTTGTTGCTGTAACAAGATGGATGCTACTACACCCAAGTACTCCAAGTCCAGGTATGAGGAAATCGTGAAGGAAGTGTCATCCTACTTGAAGAAAGTAGGATACAACCCTGACAAGATTCCTTTTGTTCCCATCTCTGGTTTTGAGGGAGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCCACTCTTCTAGATGCTCTTGACCAGATCAGTGAGCCCAAGAGGCCCTCTGACAAGCCCCCTCAGGCTGCCCCTTCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTGCCCGTTGGGCGTGTTGA 768 0.474 MGKEKVHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLSFTLGVKQMICCCNKMDATTPKYSKSRYEEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDQISEPKRPSDKPPQAAPSGCLQDWRNWNCARWAC 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0893 255 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Aed6g0893 255 PANTHER TRANSLATION FACTOR 1 236 - -
Aed6g0893 255 PANTHER ELONGATION FACTOR 1-ALPHA 1-RELATED 1 236 - -
Aed6g0893 255 CDD EF1_alpha 9 227 - -
Aed6g0893 255 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Aed6g0893 255 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Aed6g0893 255 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Aed6g0893 255 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Aed6g0893 255 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Aed6g0893 255 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Aed6g0893 255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 236 IPR027417 -
Aed6g0893 255 Pfam Elongation factor Tu GTP binding domain 7 223 IPR000795 GO:0003924|GO:0005525
Aed6g0893 255 Gene3D - 1 226 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0893 Aed-Chr6 9586814 9589499 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0893 1 233 Eukaryotic Initiation Factors Gene Family AT1G07930 96.567 1.56e-170 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0893 K03231 - gmx:100499630 474.552