Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0878 ATGGCTATGATTGGGGACGCTGTTCTTGGAATGCTGCTTGACCAACTGCTGAAAGAGGTCACGGACATGAAAGACAGGGCTGTGAAGTACAGATCCACCCTGGAAACCTTGGAGTCCACCTTGAATACAGTAAGACCAATTGCAACGAAGATTGATAATCTCAACAAGCAGTTGGAGAGACCCGAGGAAACGAAGAAGCTGCTGGATCATATGGAGAAGGGGAGGAAGCTCGTTAATGATTGCAACAAAGTCCAGTGGTGGAACTGTTGTTATAAGGCTGACTACCAGACTAAACTTGAGAGCTTGAATGAGTCGATCTTATTGTACTTTAGATTGGATATGCAAGGTGATATACTCACGGTTGGGTTGAGGAACGAGGTGATGGTGAAAGAGATTTATGAGAGAGTTGGGGATATTGTTCCCAGGAGGACTGAATTGAAAGGCGTGTGTTCGCCTCCGGAGCCGCCCGCTTTTACCGTTGGATTGGACGTTCATTTGAGGGATCTGAAGCTCAAGTTGCTGAACAACCAACATCCCGGCTCGGTGCTCACCATAACCGGAGCTGGAGGTAGATTCAAGGAAAACATATTCTTCATCACTGCACAAAAGCCCAAGTTTGACACCATAGTGCAGAGACTGTTTCAACACAAAGAATGCCAGATGCCAGATGTTCAAAGTGACGATGATGCAGTTCATCAATTGGGAAATTTGCTAAAACAAATTGGGGAAAAGTCGGAAAACCCAATACTGTTGGTCCTTGATGATGTTCCTCCTGAATCAGTATCTATTGTTGACAAATTTGTGTTCCAGATCCCAAACTACAAGATTTTGGTGACATCAAGAATCACAATTGGAGGATTTGGCCCGCCATACATGGTGAAATCACTTAATGAAGTTGATGCCATTAATCTATTTCGCCACTCTGCATCCCTGAATCAGGGTAGCTCTGAAATTCCAGATAATATTGTCAGAAAGATAGCGAAAGAGTGCAGTGGTTCTCCATTGGCACTTATAGTGACTGGCAAATCACTAAGTCTTGAACCACCGTTCGTTTGGAACAACAGGGCGAAGGATTTGTCCAAGGATCGTTCAATACTTGGTTTTGATTCTAGTGATGTTGTGCTTACTTGTCTCCAAAAAAGCTTCGATGGCTTGGATCCTAATGTGGCTGAGTGTTTTAGGGACCTAAGCTTATTTCCTGAAGCTCAGAGGATACCAGCTGCTGCACTTGTTGATATATGGGCAGAGCTGCGCGACGAAGACGATGACACTGCAATGGAGAACATCTACAAACTCGAAAAACGGAACATGGCTGATGTTACTATCACAAGGAATTCTGCTAGTGACACAATTGACTACAATTACCACTATGTTACACAACATGGTCTTCTACGGGACCTAGCTATTCGTCAAACAAGCCAAGAAAAACCAGAGAAGGGGAATAAATTAATTGTAGACTTAAGCGATGAAGCATTCACTTCAGAATGGTGTAACTTGCAGCCATCTGGGGTTGAGGTTCTAGTGCTGAACCTCCGAGAAAAGAAGCGCTCGCTACCAATGTTCATGGAGAAAATGAGTAAACTAAAAGTCCTGATAATAACGAACTATGACTTCTCTCGCACTGACTTGGAGAATTTCGAGGTGCTTGATCATCTATCTAGTCTCAAACGAATCAGATTAGAAAAGGTTTCAATTCCTTTCTTGAGCAAGACTGGAGTGCAATGGAAGAATCTGAAGAAATTCTCTTTTTTTATGTGCAATGTGAATGAAGCATTCAAAAATAGCAGTATTCAAATTTCTGATGTGCTGCCAAATTTGGAGGAGATGAACATTGACTACTGTGATATGGTGGAATTCCCCGTTGGGTTGTCTGATATTGTTTCCCTAAAGAAGCTCAGTATCACAAACTGCCATAAGCTCTCTAAACTTCCTGAAGGAATTGGAAATTTGATCAATTTGGAATCACTAAACCTTACTTCATGTACTAGTTTAGAAGAGTTGCCAGACTCAATCACAAGCCTTGGTAAACTAAACTTTCTTGACATTTCTGACTGTGTAAGCCTTGGCAATTTACCAGAGAACATGGGAGAGTTGCGTAGTTTAGAAAATCTCAACTGCAGAGGTTGCACAAGATTGACTGAATTGCCATACTCAATCACAGAGCTTGAGGGCTTAAGCAGTGTGGTGTGTGATGAAGAGACGGCTGTATTATGGGAATCTGAACCTTTCAGAACCATGCTTAGTGGTCTTACGCTAAAGATTGCTCAAGTTGATTTCAATTTGAATTGGCTTTTATAG 2298 0.423 MAMIGDAVLGMLLDQLLKEVTDMKDRAVKYRSTLETLESTLNTVRPIATKIDNLNKQLERPEETKKLLDHMEKGRKLVNDCNKVQWWNCCYKADYQTKLESLNESILLYFRLDMQGDILTVGLRNEVMVKEIYERVGDIVPRRTELKGVCSPPEPPAFTVGLDVHLRDLKLKLLNNQHPGSVLTITGAGGRFKENIFFITAQKPKFDTIVQRLFQHKECQMPDVQSDDDAVHQLGNLLKQIGEKSENPILLVLDDVPPESVSIVDKFVFQIPNYKILVTSRITIGGFGPPYMVKSLNEVDAINLFRHSASLNQGSSEIPDNIVRKIAKECSGSPLALIVTGKSLSLEPPFVWNNRAKDLSKDRSILGFDSSDVVLTCLQKSFDGLDPNVAECFRDLSLFPEAQRIPAAALVDIWAELRDEDDDTAMENIYKLEKRNMADVTITRNSASDTIDYNYHYVTQHGLLRDLAIRQTSQEKPEKGNKLIVDLSDEAFTSEWCNLQPSGVEVLVLNLREKKRSLPMFMEKMSKLKVLIITNYDFSRTDLENFEVLDHLSSLKRIRLEKVSIPFLSKTGVQWKNLKKFSFFMCNVNEAFKNSSIQISDVLPNLEEMNIDYCDMVEFPVGLSDIVSLKKLSITNCHKLSKLPEGIGNLINLESLNLTSCTSLEELPDSITSLGKLNFLDISDCVSLGNLPENMGELRSLENLNCRGCTRLTELPYSITELEGLSSVVCDEETAVLWESEPFRTMLSGLTLKIAQVDFNLNWLL 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0878 765 Gene3D - 146 284 IPR027417 -
Aed6g0878 765 Coils Coil 13 33 - -
Aed6g0878 765 PRINTS Disease resistance protein signature 182 197 - -
Aed6g0878 765 PRINTS Disease resistance protein signature 243 257 - -
Aed6g0878 765 PRINTS Disease resistance protein signature 330 344 - -
Aed6g0878 765 PRINTS Disease resistance protein signature 672 688 - -
Aed6g0878 765 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 3 115 IPR008808 -
Aed6g0878 765 Gene3D - 382 471 IPR036388 -
Aed6g0878 765 PANTHER LRR AND NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN 488 764 - -
Aed6g0878 765 Gene3D - 295 381 IPR042197 -
Aed6g0878 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 396 IPR027417 -
Aed6g0878 765 SUPERFAMILY L domain-like 461 727 - -
Aed6g0878 765 PANTHER LRR AND NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN 1 488 - -
Aed6g0878 765 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 1 488 IPR039203 GO:0050832
Aed6g0878 765 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 488 764 IPR039203 GO:0050832
Aed6g0878 765 ProSiteProfiles RPW8 domain profile. 1 148 IPR008808 -
Aed6g0878 765 Gene3D Ribonuclease Inhibitor 478 751 IPR032675 -
Aed6g0878 765 Pfam NB-ARC domain 192 361 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0878 Aed-Chr6 8957848 8964818 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0878 609 725 WRKY Transcription Factor Family AT4G12020 30.657 9.05e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0878 - - gmx:100812310 1141.72