Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0863 ATGGTGTCAGGTTCAGGAATCTGCGCGAAGCGAGTGGTGGTGGACGCGCGCCACCACATGCTAGGTCGATTGGCGTCGATCGTGGCGAAGGAGCTTCTGAACGGCCAGAAAGTGGTGGTTGTGCGGTGCGAAGAGATTTGCATCTGCGGCGGTCTTGCAGAAGATGAAGTATTTGAGATTCCTCCGCAAACGCATGAACACCAAACCCTCCCATGGCCCCATCCACTTCCGCGCCCCGCCAAAATTTTCTGGCGCACCCTTCGCGGAATGATTCCGCACAAGACAAAGCGTGGTGAAGCTGCTCTTGCTCGTTTGAAGGTGTATGAGGGAATCCCGCCTCCTTATGACAAAGTCAAGAGAATGGTTGTTCCTGATGCTCTCAAGGTGTTGAGGCTTCAGAAAGGACGCAAGTACTGTGTGCTGGGAAGGTTGTCATCTGAAGTTGGTTGGAGCTACTATGATACCATTAAGGAACTGGAGCAGAAGAGAAAGGAAAAGGCACACTTGGTTTACGAGAGAAAGAAGCAACTCAGCAAATTGAGGGTAAAAGCAGAGAAGGTTGCTGAAGAGAAACTCGGTTCCCTACTTGATGTTCTTGCTCCTGTTAAGTACTGA 615 0.5089 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICICGGLAEDEVFEIPPQTHEHQTLPWPHPLPRPAKIFWRTLRGMIPHKTKRGEAALARLKVYEGIPPPYDKVKRMVVPDALKVLRLQKGRKYCVLGRLSSEVGWSYYDTIKELEQKRKEKAHLVYERKKQLSKLRVKAEKVAEEKLGSLLDVLAPVKY 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0863 204 Gene3D Ribosomal protein L13 8 152 IPR036899 GO:0003735|GO:0005840|GO:0006412
Aed6g0863 204 TIGRFAM L13_A_E: ribosomal protein uL13 12 152 IPR005755 GO:0003735|GO:0006412|GO:0015934
Aed6g0863 204 CDD Ribosomal_L13 12 111 IPR005822 GO:0003735|GO:0005840|GO:0006412
Aed6g0863 204 Pfam Ribosomal protein L13 10 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Aed6g0863 204 PANTHER 60S RIBOSOMAL PROTEIN L13A-4 1 204 - -
Aed6g0863 204 PANTHER RIBOSOMAL PROTEIN L13 1 204 IPR005822 GO:0003735|GO:0005840|GO:0006412
Aed6g0863 204 Hamap 50S ribosomal protein L13 [rplM]. 11 142 IPR005822 GO:0003735|GO:0005840|GO:0006412
Aed6g0863 204 ProSitePatterns Ribosomal protein L13 signature. 87 110 IPR023563 GO:0003735|GO:0005840|GO:0006412
Aed6g0863 204 SUPERFAMILY Ribosomal protein L13 12 152 IPR036899 GO:0003735|GO:0005840|GO:0006412
Aed6g0863 204 Gene3D - 154 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0863 Aed-Chr6 8698396 8699015 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0863 1 204 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 76.214 5.23e-111 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0863 K02872 - gmx:100813340 325.479