Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0856 ATGCTGGAGACAACGAAACCTGAGTTGCGCGAGTTGATGGTGAAGTCGCTAATGTACCAGGCAGAGGCATGTCTAAGGGACCCCATGTATGGGTGCGTGGGCATCATATTGGATTTAAATCAAAAGATCCAAAAGATGAAAGAGGACATTGCCAAGGCCCAAACGAAGCTGACCCAATACATGGGCCCAGGGTTTGTGCAACAGTTGAAGGGTAAGGTTGTGGAATGTTCGCAACTGACTATGATGGAGCCTGGCTTTGCTCCCTCTATTCCCATTGATGTTGGTGATCTTGACAAGTAG 300 0.48 MLETTKPELRELMVKSLMYQAEACLRDPMYGCVGIILDLNQKIQKMKEDIAKAQTKLTQYMGPGFVQQLKGKVVECSQLTMMEPGFAPSIPIDVGDLDK 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0856 99 Pfam Lateral organ boundaries (LOB) domain 1 54 IPR004883 -
Aed6g0856 99 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 80 - -
Aed6g0856 99 Coils Coil 36 56 - -
Aed6g0856 99 ProSiteProfiles LOB domain profile. 1 57 IPR004883 -
Aed6g0856 99 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0856 Aed-Chr6 8382534 8382833 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0856 1 66 AS2 family AT2G23660 45.455 4.41e-14 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed6g0856 LOB 8.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0856 - - gmx:102663028 109.383