Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0855 ATGTCATCAACGCCTTCTTCGTTGTTGTCGTCTAATTCGCCGTGCGCAGCGTGCAAGCTGCTGCGGCGGAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGATAACCCGCAGCGGTTTGCCTGCGTGCACCGCGTGTTCGGCGCCAGCAACGTGTCAAAGCTGCTAAACGAGCTCAGCGTGGCGCAGCGCGACGATGCCGTCAAGTCTCTGGCCTACGAGGCGGAGGCGCGTCTCCGCGACCCCGTCTACGGCTGCGTCGGCTTCATCTCGCTCCTGCAGCAGCGCCTCGGTCAGATCCAGACGGAGCTCCACACCGCAAAGAAGGAGTTGTCCACATACCTTAGTCCCCAAGCCATGCAGCATGTGACTGAACACGGTGGTGGACAAATGATAATTCAGCAGGAGTTTCTAGAATCTCAGCAGATGGTTAATGTAGCTGGGGATCATGATGAACATCAACAGCAGCAACAACAACAACACGACATGCTTCGAAACTACGAAGAACTTATGAAGTTCAACGACGAGTTCGAGCCTAACCAAGAGGAGTTGTTGTCTCCTTCTTTACATCTCGGAAGCTTCGAGAACGTTGGGAATTACGGGATGCAACAGCAGCAACATCCCATTGAGGTGCAGTTGCTCCTCTCGCCACAGAATGAGTCACAGGGACAACAATGTCAACAACCCCATCAGCAGCAGCAGCAGCAGCAGCAGCAACAGTACTGTGAAATTGATGATGGGATGAACGACGTCGTTCCGGCTTGA 774 0.5478 MSSTPSSLLSSNSPCAACKLLRRKCTQECVFAPYFPPDNPQRFACVHRVFGASNVSKLLNELSVAQRDDAVKSLAYEAEARLRDPVYGCVGFISLLQQRLGQIQTELHTAKKELSTYLSPQAMQHVTEHGGGQMIIQQEFLESQQMVNVAGDHDEHQQQQQQQHDMLRNYEELMKFNDEFEPNQEELLSPSLHLGSFENVGNYGMQQQQHPIEVQLLLSPQNESQGQQCQQPHQQQQQQQQQQYCEIDDGMNDVVPA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0855 257 Coils Coil 93 113 - -
Aed6g0855 257 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Aed6g0855 257 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 241 - -
Aed6g0855 257 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Aed6g0855 257 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 10 241 - -
Aed6g0855 257 MobiDBLite consensus disorder prediction 223 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0855 Aed-Chr6 8345856 8347240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0855 8 123 AS2 family AT5G66870 75.862 6.54e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed6g0855 LOB 8.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0855 - - gmx:100796406 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0855 6 8345856 8347240 Aed11g1386 11 18502238 18504799 PCT