Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0826 ATGGTGGTGATTGATGAACAAAGGAACCGTGGTGATCACCGTGTGATTAGAAGGGACATGCAGGTGGAGCCTCTTCCACAACATGATCAAGCTGTAACTGTGGCATATTATGGGGAGGAATTGCATGGGGGCGTACCTCTACCCCACTTCTCTAGAATGTCAATGTCTCCTTCAAACACGTATAGACAAAACAAGGCAATGGAGAATAAATACAAGCTCTTGAGCAGTCCAATAAAGCAAGCAACGCCTGCTGAGGCTCAGAAGTTTGCAAGTTCCATTAAGGTTGCAACAGAAGGAACATCGTCTCGTGGCGAGGCCATGTCAACTGCTGTTCTTCAAGCACAGGAGCTCCAATCAAATCTGCAACGAGAATTCCCTAGTTTTGTGAAGTCTTTAGTCAGATCGCATGTTGCTAGTTGCTTTTGGATGGGTCTGCCTGTGTCATTCTGTAAACGATACTTACCAGATAAGGATACGACATTCATTTTGGAAGATGAATCCGGTAAAGAATACATGACAAAGTACATTGCATGTAAGACAGGATTGAGTGCTGGATGGAGACAGTTTTCTGTTGTGCACAAATTGCAGGAGGGTGATGCAGTGGTCTTCCAATTAGTCGAACCTACCAAATTTAAGGTCATACTACTTATTACTATGTTTGTTTTTCAGAGAAAACATGGTAAATCTGTTCCACAAGATGTCCAAAAGAAAAACAAGACCAATGAATCGAGATTGAGACCTAAGGCTAGGCCGTCAACTGAACAACAATCCGAAAACGATAGTGAGGAAGCTCTCTCAGAAGTTGTGGAGGAGGGATTTAAAATGCTCGAGTTCAATGATGTGAAAGGTTTTGAAAATTTCAGCATTGTAGTCGATGGAGTGCCAATAGATGCTGAATTCTCTACCGAGGTTCGAAACAAGTACTACAGGCTCTGCTGCAGTCAACACGCCTTTCTTCATGAGAATCTCTTCAATGGCATGAACTACAAGCTGATTGCTGGAATTATATATGAAACTGTCAACATTGCTGATGCCATAAAAGTTAGTGTGACATGCACGCCGTGTGTTGAATTTGCAAACTGGGACAAAACCTTGCTTGCTTTTGAGCATTTAGGTATGAATGTTGAATTTCTAAGAGTCCGGTTGCGCCGGCTCATGAGCATTGCCTATGAGAAAGATGATGAGGCCACAGAGACCAGAAAATACTCTGCGTATAGGAATAAGCACAGCCGTGCAGACGATGAAATAAAGAACATGGAAGCCAAGCTCCAAGAATTGAAGGGAGCATGCAATGGCTTTGGTGCTTATCTTGAGAGTTTGAAGTGCAAAGCTGAAAGCAATCATATCAAGTTTAAGAAAGAGGTTGTTGCTCCTTGGTGA 1380 0.4275 MVVIDEQRNRGDHRVIRRDMQVEPLPQHDQAVTVAYYGEELHGGVPLPHFSRMSMSPSNTYRQNKAMENKYKLLSSPIKQATPAEAQKFASSIKVATEGTSSRGEAMSTAVLQAQELQSNLQREFPSFVKSLVRSHVASCFWMGLPVSFCKRYLPDKDTTFILEDESGKEYMTKYIACKTGLSAGWRQFSVVHKLQEGDAVVFQLVEPTKFKVILLITMFVFQRKHGKSVPQDVQKKNKTNESRLRPKARPSTEQQSENDSEEALSEVVEEGFKMLEFNDVKGFENFSIVVDGVPIDAEFSTEVRNKYYRLCCSQHAFLHENLFNGMNYKLIAGIIYETVNIADAIKVSVTCTPCVEFANWDKTLLAFEHLGMNVEFLRVRLRRLMSIAYEKDDEATETRKYSAYRNKHSRADDEIKNMEAKLQELKGACNGFGAYLESLKCKAESNHIKFKKEVVAPW 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0826 459 SMART B3_2 128 219 IPR003340 GO:0003677
Aed6g0826 459 MobiDBLite consensus disorder prediction 231 263 - -
Aed6g0826 459 Gene3D - 106 220 IPR015300 -
Aed6g0826 459 MobiDBLite consensus disorder prediction 231 257 - -
Aed6g0826 459 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 51 213 IPR044837 -
Aed6g0826 459 Coils Coil 402 429 - -
Aed6g0826 459 SUPERFAMILY DNA-binding pseudobarrel domain 123 217 IPR015300 -
Aed6g0826 459 CDD B3_DNA 126 216 IPR003340 GO:0003677
Aed6g0826 459 Pfam B3 DNA binding domain 128 215 IPR003340 GO:0003677
Aed6g0826 459 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677
Aed6g0826 459 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100-LIKE 51 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0826 Aed-Chr6 7746334 7749800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0826 105 275 B3 DNA Binding Superfamily AT3G19184 36.842 7.42e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed6g0826 B3 1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0826 - - gmx:100819237 736.873