Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0825 ATGGATTGGGACGGGAAAGAGTTTGCTTGGGATCCATGTGGGTTGGAGCAGAACAATGAAGCAGCAGCAGTAGCAGCTTCAGTGGATTTGAGATTTGGTGAGGAAAAATCATCCCCAGATGCTTCTAAGGAAACAAGAGACTCAAGAACCGTGTCATCTCCATCCGGGTCATCGAAAAGATTGCGCCTTCAGAATGGATCACAGAACAACAACAACAGCAGCAACATGTGTTGTTCTGTTGTTGGATGCAACTCTGACCTCAGTGATTGCAGAGAGTATCATAGGCGCCATAGGGTCTGCGAAAAGCACTCCAAAACCCCGGTTGTGTTGGTAGGGTGGAAACAGCAAAGGTTCTACCAGCAATGCAGCAGGTTTCATTCACTTGGGGAGTTTGATGAGGTTAAGAGGGGTTGTAGGAAAAGGCTTGATGGGCATAACAGGCGCCGGAGGAAACCTCAGCCAAGATTTGGGAAATTCATGTCTATTTTATTGTTGAACTGA 501 0.4691 MDWDGKEFAWDPCGLEQNNEAAAVAASVDLRFGEEKSSPDASKETRDSRTVSSPSGSSKRLRLQNGSQNNNNSSNMCCSVVGCNSDLSDCREYHRRHRVCEKHSKTPVVLVGWKQQRFYQQCSRFHSLGEFDEVKRGCRKRLDGHNRRRRKPQPRFGKFMSILLLN 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0825 166 MobiDBLite consensus disorder prediction 33 47 - -
Aed6g0825 166 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 7 155 IPR044817 GO:0003677
Aed6g0825 166 SUPERFAMILY SBT domain 76 156 IPR036893 GO:0003677|GO:0005634
Aed6g0825 166 Gene3D - 68 139 IPR036893 GO:0003677|GO:0005634
Aed6g0825 166 MobiDBLite consensus disorder prediction 48 71 - -
Aed6g0825 166 Pfam SBP domain 78 151 IPR004333 GO:0003677
Aed6g0825 166 ProSiteProfiles Zinc finger SBP-type profile. 75 152 IPR004333 GO:0003677
Aed6g0825 166 MobiDBLite consensus disorder prediction 30 71 - -
Aed6g0825 166 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 7 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0825 Aed-Chr6 7740413 7741049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0825 78 154 SBP-box Gene Family AT5G50670 74.026 1.09e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed6g0825 SBP 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0825 - - gmx:100792071 241.121