Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0806 ATGGTCCTCGAAAACAATATTCTGATTGAGGAGGAGAACAACCGTGAGCCAGTTGAAGAGTTGCAAGTGGGACTGAGTGTTGAAACGATCACGCAGCACCTGAGGAGTGAAATTTTTGTATCTGATGTTTTAGATGGCAAAGAAAAGTGCCCCATCTGTCAGGATGAGTTTGAAGATGGAAGCGTGATTGGAGAGCTGCATCAATGTGAGCACAAGTTTCATGTCGACTGCATCAAACTGTGGCTTGTGCGCAAGAACAATTGCCCTAATAATTTTTAA 279 0.4337 MVLENNILIEEENNREPVEELQVGLSVETITQHLRSEIFVSDVLDGKEKCPICQDEFEDGSVIGELHQCEHKFHVDCIKLWLVRKNNCPNNF 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0806 92 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 91 IPR013083 -
Aed6g0806 92 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 16 89 - -
Aed6g0806 92 Pfam Zinc finger, C3HC4 type (RING finger) 49 89 - -
Aed6g0806 92 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 16 89 IPR045191 GO:0061630
Aed6g0806 92 SUPERFAMILY RING/U-box 37 89 - -
Aed6g0806 92 ProSiteProfiles Zinc finger RING-type profile. 50 89 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0806 Aed-Chr6 7291003 7292566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0806 9 90 C3H Transcription Factor Family AT5G47610 36.905 9.65e-12 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0806 - K10635 pvu:PHAVU_003G242800g 88.9669