Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0789 ATGGAAGGAGGAGAAGGAGGAAGCGTTGGCGCAGCAACAAGGAAGAGAGGGAAGGAGAGTGAGACGACGCGCTACAAAGGAATCAGGATGAGGAAGTGGGGAAAGTGGGTCGCTGAGATTCGGGAACCCAACAAGCGTTCGCGGATTTGGCTCGGTTCTTACTCCACTCCCGTCGCGGCTGCACGTGCCTACGACACCGCCGTTTTCTATCTCCGGGGACCCTCCGCGCGCCTCAACTTCCCGGAGCTTCTCGCCGTGGAGTGCCCTGATGCCTCGGAGGATGACATGTCCGCGGCCTCCATCAGGAAGAAGGCCACCGAGGTCGGCGCCAGAGTCGACGCGCTCCACCGTTCTCAGTTCCCGCACGCGCCGCCTGCAGGGGAATTTGCGGAGCGGGTCGACCTCAATAAGATACCCGAACCCGAGAATGAGGATTGCAGCGATTACTGGGGTGGGGACTAG 462 0.6104 MEGGEGGSVGAATRKRGKESETTRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLAVECPDASEDDMSAASIRKKATEVGARVDALHRSQFPHAPPAGEFAERVDLNKIPEPENEDCSDYWGGD 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0789 153 MobiDBLite consensus disorder prediction 1 24 - -
Aed6g0789 153 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Aed6g0789 153 CDD AP2 23 83 IPR001471 GO:0003700|GO:0006355
Aed6g0789 153 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 7 145 - -
Aed6g0789 153 PRINTS Ethylene responsive element binding protein signature 63 83 IPR001471 GO:0003700|GO:0006355
Aed6g0789 153 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Aed6g0789 153 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Aed6g0789 153 Pfam AP2 domain 23 73 IPR001471 GO:0003700|GO:0006355
Aed6g0789 153 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 7 145 - -
Aed6g0789 153 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Aed6g0789 153 MobiDBLite consensus disorder prediction 121 153 - -
Aed6g0789 153 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0789 Aed-Chr6 7086951 7087412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0789 25 145 AP2-EREBP Transcription Factor Family AT3G50260 67.939 3.12e-54 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aed6g0789 AP2 3.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0789 K09286 - gmx:100789373 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1431 11 18868418 18868942 Aed6g0789 6 7086951 7087412 PCT