Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0728 ATGACGCAATTCACACCCTCATCACTTCCTCCTTTGCATCACCACCAAATCACACTCACACCCCCCCTCCCCAACAACCCTACTACTACTACCATCATGAACAAAAACCAAATCCCTAGGCCTAGGCCTTGGCCTGCAGGGTTTCCTACTACTACTACTACTACTTTTTCTTCTTCAAATTCCAACTCCAAGGCTTTAACAAACTTCGGTGACGCTAACTGCATGGAACAGTTACTCGTCCACTGCGCCAACGCCATAGACACCAACGATGTCACCCTCGCGCAACAAATCCTATGGGTCCTCAACAACATAGCCCCTCCCGACGGTGACTCCAACCAGCGCCTCGCCGCGAGCTTCCTCCGCGCCCTCACCGCCCGCGCCGCCCGAACCGGCGCCTGCAAGATGCTCGTCGCCGTCGCGAACCTCTCCATCGACACCCACCGCTTCTCCGTCATCGAGCTCGCCAACTTCGTCGACCTCACCCCGTGGCACCGCTTCGGCTTCTCCGCCGCCAACGCCGCCGTCCTCGAGGCTACCGAGGGCTTCCCCGTCATCCACATCGTCGACCTCAGCTCCACGCATTGCATGCAGATTCCAACGCTCATCGACGCTATCGCCGCCAGCCGCCACGACGCCCCGCCGTTAATCAAGCTCACGGTCGCCGACGCCAGCTTCAGAGACGTCCCTCCCATGCTCGACCTCTCCTACCACGAACTCGGCAACAAGCTCGTCAATTTCGCTCGATCGAGAAACATCGTCATGGAATTCAGCGTTGTTTCTTCCACCTACCAAGACGGTTTCTCCAATTTAATCGAACATTTAAGAGTGCAACAGCAACAACAATTTGTTTACGCAGCAGAGCCTCGCCGCAACGAGGCTCTCGTTATAAACTGTCACATGATGCTTCATTACATCCCGGACGAAACCCTATCCGAAACAGACCTAACCTCTTATCATCATCATCAACAAAATCGTCATCTCTATGACTCCTATTCCAATTCCCCTTCCTCATATTTTTCTCTCGTCACTCCAACCTCCTCACTTCGATCCTTATTCCTGAAATCCTTGCGCGGTCTCGACCCGACCGTGGTGATCCTCGTCGACGAGGACGCCGATTTGACCTCCAACGATCTCGCATCCAGGCTGAGATCCGCCTTCAACTACCTCTGGATCCCCTACGACACCGTGGACACGTTCCTGCCGCGGGGGAGCAAGCAGAGACAGTGGTACGAGGCGGACATAGGCTGGAAGATCGAGAACCTCATCGCACACGAGGGCGCGCAGAGAGTGGAGCGCGTGGAGCCGAAGAACAGGTGGGAGCAGCGAATGAAGAACGCGGATTTTCAAGGCGTGGCTTTCAGCGAAGACTCGGTTGCGGAAGTGAAGGCAATGCTGGACGAACACGCCGCTGGTTGGGGGCTGAAGAAGGAAGATGAAAACATTGTGCTCACTTGGAAGGGACACAACGTTGTTTTCGCCTCTGCTTGGTTACCTGCTTGA 1500 0.5533 MTQFTPSSLPPLHHHQITLTPPLPNNPTTTTIMNKNQIPRPRPWPAGFPTTTTTTFSSSNSNSKALTNFGDANCMEQLLVHCANAIDTNDVTLAQQILWVLNNIAPPDGDSNQRLAASFLRALTARAARTGACKMLVAVANLSIDTHRFSVIELANFVDLTPWHRFGFSAANAAVLEATEGFPVIHIVDLSSTHCMQIPTLIDAIAASRHDAPPLIKLTVADASFRDVPPMLDLSYHELGNKLVNFARSRNIVMEFSVVSSTYQDGFSNLIEHLRVQQQQQFVYAAEPRRNEALVINCHMMLHYIPDETLSETDLTSYHHHQQNRHLYDSYSNSPSSYFSLVTPTSSLRSLFLKSLRGLDPTVVILVDEDADLTSNDLASRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEADIGWKIENLIAHEGAQRVERVEPKNRWEQRMKNADFQGVAFSEDSVAEVKAMLDEHAAGWGLKKEDENIVLTWKGHNVVFASAWLPA 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0728 499 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 52 497 IPR005202 -
Aed6g0728 499 Pfam GRAS domain family 75 496 IPR005202 -
Aed6g0728 499 ProSiteProfiles GRAS family profile. 66 497 IPR005202 -
Aed6g0728 499 MobiDBLite consensus disorder prediction 1 42 - -
Aed6g0728 499 MobiDBLite consensus disorder prediction 1 37 - -
Aed6g0728 499 PANTHER SCARECROW-LIKE PROTEIN 32 52 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0728 Aed-Chr6 6438210 6439709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0728 28 498 GRAS Transcription Factor Family AT3G49950 53.586 7.33e-176 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aed6g0728 GRAS 2.4e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0728 - - gmx:100814364 730.709