Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0700 ATGCCAATGTTTGAGCCTTCTGGCAAGAGGGATGGGGTCGAGGGCCAGATTCTAGATCTGGACACTGCGGTGAAAGATGGGGTTTTGGGTGGTGTGGATTATTCTATGATTGTGGGAACTGGGGTTGGTGAAAAATTGGATCTTGGGTTAATGATCGAAGAGTTGGACTTGTGTGAAGTTCCCTCTGTGTTCATTTGCCCAATTTCCCTTGAGCCAATGCAGGACCCCGTGACCCTTTGCACTGGCCAAACCTATGAGAGGTTCAACATTCTCAAATGGTTCAGTTTGGGGCACTTCACTTGCCCCACCACAATGCAAGACCTATGGGACCATTCCCTTACTCCAAACACCACCCTCCACCGTTTGACATCAACTTGGTTTAATCAAAAGTACCTTTTGGTGAAGAAAAGATCAGAAGACGTGCAAGGGAGGGTGTTGGAGCTTGTTGAGACTCTCAAGAAGGTGAAGGGTCAAGCCCGTGTTGTTGCCCTCAAGGAGCTCCATCAAGTGGTGGCTGCTGCTCATGCCATTGCCTCCAAAGCATTGGTTGATGGTGGCGGGGTTGCCGTGCTGTCGTCGTTGCTCGGCCCTTTCACCTCGCACGCCGTTGGCGCTGAGGTCGTTGGTGTTCTTGTGAGTTTGAACAACCTTGATTGTGAGTCAAAGAGGAACCTAGTGCAGCCTGCTAAGGTTTCATTGGTGGTGGACATTTTGAATGAGGGTTCAATTGAGACAAAGATCAATTGCACACGGCTGATCGAGACACTGATTATTGAAGGGGAGGATTTCCAGTTCCAGATGGAGATTCTTAGGAGTCATAGCCTTTTGGTTGGTTTGATGAGGCTTGTGAAGAACAAGAGGCACACCAATGGAATCTGCTCTGGACTGAGGCTCCTCAGAAGAGTGTGCTTGCATTCTGAAGTTAAGAGTTTGATGGTTAGCATTGGAACTGTTTCTCAATTGGTTGAATTGTTGTCTGGTTTGGATCATGATTGTTTGGAATTGGCTCTTTCAATTTTGGATGCATTGGCTTCTGTCCCTGAAGGGATATTGGCATTGAAGGATTGTTCTAATACCATACCTGTGATAGTGAAACTATTGATGAGGGTCTCAGAGAATTGCACTCAATATGCATTGTCAATACTGTGGTCTGTGTGCAAGCTTGCACCTGAGGAGTGCTCTTTGATTGCTGTGGAAGCAGGAATTGCTGCAAAACTCCTCCTTGTGATTCAAAGTGGTTGCAATCCTGTATTGAAACAACAATCTGCTGAGCTTTTGAAGTTGTGTAGTTTGAATTATTCAGATACAATCTTCATTTCCAAGTGCAAGCTTACTAGAATCATCCAATGA 1350 0.4607 MPMFEPSGKRDGVEGQILDLDTAVKDGVLGGVDYSMIVGTGVGEKLDLGLMIEELDLCEVPSVFICPISLEPMQDPVTLCTGQTYERFNILKWFSLGHFTCPTTMQDLWDHSLTPNTTLHRLTSTWFNQKYLLVKKRSEDVQGRVLELVETLKKVKGQARVVALKELHQVVAAAHAIASKALVDGGGVAVLSSLLGPFTSHAVGAEVVGVLVSLNNLDCESKRNLVQPAKVSLVVDILNEGSIETKINCTRLIETLIIEGEDFQFQMEILRSHSLLVGLMRLVKNKRHTNGICSGLRLLRRVCLHSEVKSLMVSIGTVSQLVELLSGLDHDCLELALSILDALASVPEGILALKDCSNTIPVIVKLLMRVSENCTQYALSILWSVCKLAPEECSLIAVEAGIAAKLLLVIQSGCNPVLKQQSAELLKLCSLNYSDTIFISKCKLTRIIQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0700 449 Pfam U-box domain 60 130 IPR003613 GO:0004842|GO:0016567
Aed6g0700 449 PANTHER WDSAM1 PROTEIN 33 448 IPR045185 GO:0061630
Aed6g0700 449 SMART Ubox_2 63 126 IPR003613 GO:0004842|GO:0016567
Aed6g0700 449 SUPERFAMILY ARM repeat 216 434 IPR016024 -
Aed6g0700 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 142 IPR013083 -
Aed6g0700 449 ProSiteProfiles U-box domain profile. 59 133 IPR003613 GO:0004842|GO:0016567
Aed6g0700 449 SUPERFAMILY RING/U-box 54 130 - -
Aed6g0700 449 Gene3D - 147 440 IPR011989 -
Aed6g0700 449 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 33 448 - -
Aed6g0700 449 CDD RING-Ubox_PUB 64 106 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0700 Aed-Chr6 6132899 6134248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0700 1 449 U-box Gene Family AT3G49810 67.982 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0700 - - gmx:100781741 746.117