Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0683 ATGATGGGTCTTGATCAAGATGCTAGCAACTCTGGCCTTCAGCTTATTCTAGGTTTAGCTTTGACCGCCACCGCCGCCGCCACACCATCGCCACCGTCTAATATTTCCAATAAGCTTGATCATGTTGATCATCATCACCATCTTATAACCACTCTCAGGCCAAAGTTATCATCATCATCCTTCTCCTCTGAGACTGAACCATCATTAACGTTGGGTTTGTCCCGTGAGAGTTACCTCAAAGTCCCCAAAAACATCATAGGACACACCACCACCACCACCAACAACAAAGTCTTCTCATCCTGTGATGACCCTCTTGACTTGTCCACCACACAGACTAATTCACCTCATCACAGCGCTGTTTCCTCCTTCTCCAGTGGAAGGGTCAAGAGGGAGAGGGATCTCAGCTGCGAAGAAGTAGTAGATGCAACAGAGATAGATCAGAGCTGCGAAGGAATAATAAGAGCCACCGTCGACGAAGACGACGAAGGCGCCGCCGCCAGGAAGAAACTCAGGCTCACAAAACAACAATCTGCTTTGCTAGAAGAAAGCTTCAAACAACACAGCACCCTCAATCCTAAACAGAAGCAAGCTTTGGCGAAGCAGTTAAATCTAAGGCCACGACAAGTTGAGGTGTGGTTCCAGAACCGGAGAGCAAGAACAAAGCTGAAGCAGACAGAGGTGGACTGCGAGTTCCTTAAAAAATGTTGTGAAACATTAACAGATGAAAACAGACGGTTACAGAAGGAGCTTCAAGAGCTGAAGGCACTGAAACTGCAGGCTCAGCCTTTGTACATGCCTATGCCTGCGGCAACCCTCACCATGTGCCCCTCTTGCGAGAGGCTCGGCGGCGCCGCCGCCAACGGCGCTTCCCCTAAGACACTACCATTCTCCATGGCTCCTAAGCCTCACTTCTTCAACCCCTTCGCCAATCCTTCTGCAGCATGTTGA 948 0.4958 MMGLDQDASNSGLQLILGLALTATAAATPSPPSNISNKLDHVDHHHHLITTLRPKLSSSSFSSETEPSLTLGLSRESYLKVPKNIIGHTTTTTNNKVFSSCDDPLDLSTTQTNSPHHSAVSSFSSGRVKRERDLSCEEVVDATEIDQSCEGIIRATVDEDDEGAAARKKLRLTKQQSALLEESFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLQAQPLYMPMPAATLTMCPSCERLGGAAANGASPKTLPFSMAPKPHFFNPFANPSAAC 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0683 315 ProSiteProfiles 'Homeobox' domain profile. 163 223 IPR001356 GO:0003677
Aed6g0683 315 PANTHER - 42 315 - -
Aed6g0683 315 SUPERFAMILY Homeodomain-like 162 224 IPR009057 -
Aed6g0683 315 ProSitePatterns 'Homeobox' domain signature. 198 221 IPR017970 GO:0000981|GO:0006355
Aed6g0683 315 Pfam Homeodomain 167 221 IPR001356 GO:0003677
Aed6g0683 315 SMART halz 223 267 IPR003106 GO:0006355|GO:0043565
Aed6g0683 315 Pfam Homeobox associated leucine zipper 223 257 IPR003106 GO:0006355|GO:0043565
Aed6g0683 315 Coils Coil 229 259 - -
Aed6g0683 315 CDD homeodomain 167 224 IPR001356 GO:0003677
Aed6g0683 315 Gene3D - 171 221 - -
Aed6g0683 315 SMART HOX_1 165 227 IPR001356 GO:0003677
Aed6g0683 315 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 42 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0683 Aed-Chr6 5946925 5948480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0683 2 315 Homeobox Transcription Factor Family AT4G37790 55.385 6.20e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed6g0683 Homeodomain 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0683 K09338 - gmx:100784937 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1511 11 19415509 19417857 Aed6g0683 6 5946925 5948480 PCT