Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0665 ATGGACCCACGAGAGCCTCCCCGGCCACCGCCGCCGACCATCATCGCGGGCCCCACCTCCTACGGCCCTAATTCCTCCTCCCCCGCCGTCACCATGATGGCCCCCGCCACCGCGCGATTCCCCTTCGGCGCCGTTCCGCCACCGCAGCACCAGCAGCAGAATCATCCGCCCTCGTCTGAGCCCTTCCCCTCCGTCGCCGCCGCATCCTACGACGGCTCCTCCTCGCCGATGAAGCCCTGCTCCCTCGCCAAGAAGAAGCGCGGCCGTCCCCGGAAATACTCGCCGGACGGTAACATTGCCCTCGGCCTCGCCCCCACTCATGCCTCATCTCCACCGCCACCCTCTGCCGCCGGAGATTCGGCCGGCACGGCCTCTGCCGATGCTCCGGCGAAGAAGCACCGCGGAAGGCCACCCGGGTCTGGGAAGAAACAGCTTGATGCACTCGGAGCTGGTGGGGTTGGATTCACGCCCCACGTGATTCTGGTGGAGTCTGGCGAGGACATCACAGCTAAAATTATGGCCTTTTCTCAGCAGGGGCCTCGGACAGTTTGTATTCTTTCTGCTATTGGTGCAATCGGTAATGTCACCCTTCGTCAGCCTGCATTGTCTGGTGGTATTGCTACATACGAGGGCCGATTTGAGATTATATCTTTATCAGGTTCTTTGCAGCCATCTGAAAACAATGGTGAACGTAGCAGAACATGCACTTTGAATGTAACACTTGAGGGGTCCGATGGACGTGTTGTGGGTGGTGGAGTTGCTGGAACGCTAACTGCAGCATCAACTGTACAGGTCATTGTGGGTAGCTTTATTGCGGATGGGAAAAAGAGCTCGAATGCCCTGAAATCTGGGCCTTCTTCTGCAGCAGCACCACCCCAAATGCTAACCTTTGGTGCACCCATGACTCCAACTAGTCCTACATCTCAAGGGCCTTCAACTGAGTCCTCTGAGGAACAGGATCATAGTCCTTTTTGTAGAGGGCCTGGGCCCGGGCCTGGACATGGGCCTGGGCTCTACAATAATGCTAGCCAGCCCGTTCATAATATGCCCATGTACCATCATCCACTATGGGCTGGGCAAACTCACCAGTGA 1092 0.5806 MDPREPPRPPPPTIIAGPTSYGPNSSSPAVTMMAPATARFPFGAVPPPQHQQQNHPPSSEPFPSVAAASYDGSSSPMKPCSLAKKKRGRPRKYSPDGNIALGLAPTHASSPPPPSAAGDSAGTASADAPAKKHRGRPPGSGKKQLDALGAGGVGFTPHVILVESGEDITAKIMAFSQQGPRTVCILSAIGAIGNVTLRQPALSGGIATYEGRFEIISLSGSLQPSENNGERSRTCTLNVTLEGSDGRVVGGGVAGTLTAASTVQVIVGSFIADGKKSSNALKSGPSSAAAPPQMLTFGAPMTPTSPTSQGPSTESSEEQDHSPFCRGPGPGPGHGPGLYNNASQPVHNMPMYHHPLWAGQTHQ 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0665 363 Pfam Plants and Prokaryotes Conserved (PCC) domain 157 270 IPR005175 -
Aed6g0665 363 SMART AT_hook_2 131 143 IPR017956 GO:0003677
Aed6g0665 363 SMART AT_hook_2 84 96 IPR017956 GO:0003677
Aed6g0665 363 SUPERFAMILY AF0104/ALDC/Ptd012-like 155 271 - -
Aed6g0665 363 MobiDBLite consensus disorder prediction 298 318 - -
Aed6g0665 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 50 322 - -
Aed6g0665 363 MobiDBLite consensus disorder prediction 277 346 - -
Aed6g0665 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 50 322 IPR039605 GO:0003680
Aed6g0665 363 MobiDBLite consensus disorder prediction 1 145 - -
Aed6g0665 363 MobiDBLite consensus disorder prediction 1 17 - -
Aed6g0665 363 CDD DUF296 156 226 IPR005175 -
Aed6g0665 363 Gene3D - 157 282 - -
Aed6g0665 363 MobiDBLite consensus disorder prediction 18 32 - -
Aed6g0665 363 ProSiteProfiles PPC domain profile profile. 151 291 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0665 Aed-Chr6 5695033 5702149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0665 9 363 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 43.796 1.87e-78 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0665 - - var:108323770 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1531 11 19560977 19564858 Aed6g0665 6 5695033 5702149 PCT