Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0662 ATGCCAGTTCCACTTGCTCCCTACCCTACACCACCAGCTCCTTATACACCACCAGCTAATGGTGTACAGAGTCAACTTGTATGTTCTGGTTGTAGAAACCTTCTGGTGTTTCCAGTTGGAGCCACATCTGTGTGCTGTGCTGTTTGCAATGCTGTCACAGCAGTGCCACCCCCTGGCACAGAAATGGCCCAGTTAGTTTGTGGAGGTTGCCATACTTTACTCATGTACATCCGCGGCGCAACAAGTGTCCAATGTTCTTGTTGTCACACTGTCAATCTAGCTTTGGAAGCAAATCAAGTGGCACATGTGAACTGTGGGAACTGCAGGATGCTACTGGCTTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCAGTTGGGGCCACAGCAAGCGCCACTGATCAGAAGTTCAGCACCTAA 438 0.484 MPVPLAPYPTPPAPYTPPANGVQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLAYQYGARSVKCAVCNFVTSVGATASATDQKFST 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0662 145 PANTHER PROTEIN LOL1 1 142 - -
Aed6g0662 145 SUPERFAMILY Multiheme cytochromes 28 126 IPR036280 -
Aed6g0662 145 Pfam LSD1 zinc finger 105 129 IPR005735 -
Aed6g0662 145 Pfam LSD1 zinc finger 67 91 IPR005735 -
Aed6g0662 145 Pfam LSD1 zinc finger 28 52 IPR005735 -
Aed6g0662 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Aed6g0662 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 25 55 IPR005735 -
Aed6g0662 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 102 132 IPR005735 -
Aed6g0662 145 PANTHER PROTEIN LSD1 1 142 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0662 Aed-Chr6 5669521 5672505 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Aed6g0662 zf-LSD1 5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0662 - - gmx:100306356 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1533 11 19578528 19579747 Aed6g0662 6 5669521 5672505 PCT