Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0659 ATGTTGGGAGGGCTAGTGCTATGGAGATTCCGGTGCTGGGCAACGGGAGCACTGTGCCGGCTACCAGTGAGGGTGGTGCCAATTCGGTTGGTGTTATGGCGCCAGCTTTGTGTAGGTTTCATGGGGGGGTGGGGATTTGGCAATGGGGGAGGCTTGGAGTTTCCTGTGAATGGGATATTCTCTTGTGGTGCAGAGATGAATTTGCAGCTGCAAAGAGACATTGAGTTTCCGAAGAGGTTTAATCTTTCTCCTTCAATGAAGTCCTTATTGAAGAGAAATGTTGCTATGTTTGCTGCTGGTTTTAGGGCAAACTCCAAGCAATTGCAGGTGCAGGTGAAGGCCGCTCCTGGGCGGAGTACCACGCCTAATTTGGATTCTTCGGCTGCATCTGGGACGGAAGTCTCAGCTGAGCAGTCCAGAGGAGATTCACAGAATCTTGATAGCCAATATGCCGTGAATTCGGTGCTGAGTAAATTTCGTGATTTGAATCTTGATGAGAATTTGGAGTTAGTGGCGGAAGATCAGAAAGATGAGGTGATAGTCACTTTATTTCATCAGATTAAGGATCTTGAGAAACAGGTCAGTGAACGAAAAGATTGGGCTCATCAGAAGGCAATGCAAGCAGCAAGAAAGCTAAGCAGTGATCTGACTGAGCTCAAAATGTTGCGGATGGAAAGAGAGGAGACTCAAAAATTGAAGAAAGGGAAACCGGCACTTGAGGACACAACCATGAAGAGGCTCTCAGAGATGGAGAATGCTTTGAGAAAGGCCAGTGGTCAACTGGACCTTGCGAATGCAGCTGTGAGGAGACTAGAAACTGAGAATGCAGAAATGAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAGTCGGTAACAGCTTGCTTAGAAGTTGCAAAAAGGGAGAAAAAATGCTTAAAGAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTGCAGCAAGAGATTTCTGATGAAAGAGAAAAGATTTTGAAGACACAAGAAATATTGGTTCAGATTAGACAATATCAAAAGGAAGCTGAGATTTGTGGCCTTGAGTTGTGGCCTCCATCTCAGAAAATTGCAGCTGTTGCAACTTCTATTATACATGGGGACAAAATCCCTTCTCTACTCCTGTTGTTTTGTGTGTTATTGAAACTGTTTTATTTATCAGCTATCGCATACTGTGCATTCATCAATTCATGGGTTAAGTGGAAGGAGGAATTGAAGGCTAAAGAGGAAGCCCTAGTACTAGTCGAGGAGGAACGCTGCTCTAAGGAAGCAGCCGAGTCCAACAATAAGAGGAAGCTCGAGGCTTTGCGTCTGAAGATCGAGATAGATTTCCAGCGCCACAAGGATGATCTACTGCGACTCGAGCAGGAGCTCTCGCGCCTCAAAGCGTCTGCTGCTCAGTCCGCCGAGTTGCATAACCAGTCAAGCAATTCGCCAACGAGCAACTCTGAGGGTGTGAAGCCCCAAAGAGAGACCATTGCCAGGCTGCTTCAGGAACTAGACAATCTGGAGGACTTTTCGGAGAAAGAAGTGAATAGCAACAGAGAATGCATTATATGTATGAAAGATGAAGTCTCCATTGTGTTCTTGCCGTGTGCACACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGAAGAAAAGGAAAAGCTACTTGTCCTTGCTGCAGGGTTCAAATCCAACAGAGAATCCGTGTATTTGGGGCAAGTTCCTAG 1731 0.4581 MLGGLVLWRFRCWATGALCRLPVRVVPIRLVLWRQLCVGFMGGWGFGNGGGLEFPVNGIFSCGAEMNLQLQRDIEFPKRFNLSPSMKSLLKRNVAMFAAGFRANSKQLQVQVKAAPGRSTTPNLDSSAASGTEVSAEQSRGDSQNLDSQYAVNSVLSKFRDLNLDENLELVAEDQKDEVIVTLFHQIKDLEKQVSERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQKLKKGKPALEDTTMKRLSEMENALRKASGQLDLANAAVRRLETENAEMKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQEISDEREKILKTQEILVQIRQYQKEAEICGLELWPPSQKIAAVATSIIHGDKIPSLLLLFCVLLKLFYLSAIAYCAFINSWVKWKEELKAKEEALVLVEEERCSKEAAESNNKRKLEALRLKIEIDFQRHKDDLLRLEQELSRLKASAAQSAELHNQSSNSPTSNSEGVKPQRETIARLLQELDNLEDFSEKEVNSNRECIICMKDEVSIVFLPCAHQVMCASCSDEYGRKGKATCPCCRVQIQQRIRVFGASS 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0659 576 Coils Coil 303 337 - -
Aed6g0659 576 SMART ring_2 522 561 IPR001841 -
Aed6g0659 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 507 573 IPR013083 -
Aed6g0659 576 MobiDBLite consensus disorder prediction 473 493 - -
Aed6g0659 576 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 67 575 - -
Aed6g0659 576 PANTHER OS05G0141500 PROTEIN 67 575 IPR046934 -
Aed6g0659 576 ProSiteProfiles Zinc finger RING-type profile. 522 562 IPR001841 -
Aed6g0659 576 Coils Coil 247 288 - -
Aed6g0659 576 Coils Coil 449 476 - -
Aed6g0659 576 MobiDBLite consensus disorder prediction 112 146 - -
Aed6g0659 576 Pfam Zinc finger, C3HC4 type (RING finger) 519 567 - -
Aed6g0659 576 SUPERFAMILY RING/U-box 502 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0659 Aed-Chr6 5646202 5652050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0659 502 572 C3H Transcription Factor Family AT1G73950 36.000 2.75e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0659 - - gmx:100797917 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1534 11 19582262 19585794 Aed6g0659 6 5646202 5652050 PCT