Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0629 ATGACTCTCTCTCTTTTGTGTCCTCTTTTACTTGTCACCTTTCTTTTCATGCAAACTCTGGCAGATACTTCATTTGTTCAATCTCGAGCAGCATTTTACCCAAACTCTCAAGAAAATGGCACAGAAGTTGGTGCATGTGAATTTGGTTCCTTTGGTGCTACTGTTAATGGTGGGGATGTATCAGCTGCATCTATTCTTTATCGAAAAGGTGTTGGCTGTGGTGCATGTTACCAGGTGAGATGTAGCAATAGTGGTTTATGCTCAGACAACGGTGTGAGTGTGGTTATCACAGACCAAGGCTCAGGTCATAACACTGACTTTATTCTTAGCCAACGAGCCTTTGGTAAGATGGCTCTGAACACTGGCGCAGCTGCTTCTCTATTAGCTCTTGGCGTGACTCAGAACTTTGTGTGCAAGTTACTGGACCGGAGTCGTGGGGCAATTTGGACCACTGCAGCACCACCGAGTGGACCTTTGTCTTTAAGGATGTTGTTTAGTCCTGAAGAAGAAGATGGAGAAGAAACATGGGTGGTTCCTGTTAATAACATACCACAAGACTGGCAAGCAGGACAAACCTACGACTTAGGGGTACAAGTGGACCAATAA 606 0.4488 MTLSLLCPLLLVTFLFMQTLADTSFVQSRAAFYPNSQENGTEVGACEFGSFGATVNGGDVSAASILYRKGVGCGACYQVRCSNSGLCSDNGVSVVITDQGSGHNTDFILSQRAFGKMALNTGAAASLLALGVTQNFVCKLLDRSRGAIWTTAAPPSGPLSLRMLFSPEEEDGEETWVVPVNNIPQDWQAGQTYDLGVQVDQ 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0629 201 SUPERFAMILY Barwin-like endoglucanases 11 131 IPR036908 -
Aed6g0629 201 SUPERFAMILY PHL pollen allergen 127 194 IPR036749 -
Aed6g0629 201 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 8 133 - -
Aed6g0629 201 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 133 200 - -
Aed6g0629 201 PANTHER EXPANSIN-B3 133 200 - -
Aed6g0629 201 PANTHER EXPANSIN-B3 8 133 - -
Aed6g0629 201 Pfam Lytic transglycolase 64 120 IPR009009 -
Aed6g0629 201 Gene3D - 14 134 IPR036908 -
Aed6g0629 201 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 141 195 IPR007117 -
Aed6g0629 201 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0629 Aed-Chr6 5386377 5388237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0629 5 194 Expansin Gene Family AT4G17030 34.298 2.77e-31 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0629 - - gmx:100791557 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1554 11 19704592 19706210 Aed6g0629 6 5386377 5388237 PCT