Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0617 ATGGATCAGTTGTCGGCGATCAGCGAGGACCTGGCCGAGATCGACGGACACATCGCCGACAATTTCCGTGCCCTATCAAATGGATTTCAGAAGTTGGAGAAGATCAAGGATTCGAGTAGACAGAGCAGGCAGTTGGAAGAACTCACGGAAAAATTGCGAGAATGCAAACGGCTTATTAAGGACTTCGATAAAGAAGTCAAAACTTATGAGAAGAGCTATGACAGAGACACCAACAAAATGTTGAATGAGAAAAAACAGTCAATGATCAAAGAGTTAAACTCATATGTTGCTTTGAAAAAGCAGTATGCTACAAATATTGAGAATAAACGAATTGAACTCTTTGAGGGGCCCAATGAAGGTTATGAAGAAGAAAATGTCTTGCTAGCATCCTCAATGACAAATGAACAACTAGTGGGTCGTGGGAATCAGATGATGGATGAGACAGATCAAGCCATTGAAAGGGGAAAGAAGGTAGTTCAAGAAACAATAAATGTTGGTACAGATACTGCAGCAGCTCTTAAGGCTCAGACGGAACAAATGAGCAGAGTTGTCAATGAGCTGGATTCAATCCATTTCTCTATGAGGAAAGCCTCTAAATTGGTCAAGGAAATCGGTAGGCAGGTTGCTACTGACAAGTGTATTATGGCTCTACTTTTCCTTATCGTCATTGGAGTAATTGCTATCATCATTGTAAAGGTACGAGAACTTGTGCACCCAGGCAACAAGGACATTCGTGACATTCCAGGACTAGCCCCTCCAAACCTACCTTACTATTATGATGTTCTAGTATATATAGAAGTGATGGTTGCTGAGGTTGTAAATGTCGAGTTTTTCCATTATGATCTTGTGTGGATTCGAGTAGGTGATGAGTCCTTAAGACAAGAGCAAATCCGCACCAGAATTGCACAAGAAGAAAAACCACCACCACCCCGCCGTGAACCGCGCCGCCAACTCCACCGGGGTCATAAAGAATGGCTTGCTGAAGTTCAATTTCTCGGCATTGTAAATCACCCAAATTTGGTTAAGCTTTTGGGATACTGCTCGGTGGATGGAGAAAGAGGAATCCAACGGCTGTTGGTGTACGAGTTCATGCCCAACAGGAGCTTGGAGGATCACCTTTTCAACAAAAACTTACCAACCCTGCCTTGGAAAACCAGATTGCAGATCATGCTCGGTGCTTCGCAAGGATTAGCTTATCTACACGGGGGACTGGAGATTCAGGTAGTTGGAACACAGGGATATGCTGCACCAGAATACATCGAAACAGGTCACCTGAAAGTTCAGAGTGACATGTGGAGTTTTGGTGTTGTATTGTATGAGATCCTCACAGGAAGGAGGTCATTGGAAAGAAACCGTCCCACTGCAGAACAGAAGCTTCTAGATTGGGTGAAACAGTACCCAGCTGACACCAGCCGATTTGTCGTCATAATGGACCCTCGTCTCAGAAACCAGTATTCTCTTCCTGCAGCTCGCAAAATAGCCAAGTTGGCTGATAGCTGCTTGAAGAAGAATCCAGAAGATAGACCCTCCATGACTCAGATTGTGGAATCCTTGAAGCAAGCATTGCAATTTTCAGACACTTCTCAAGACATTGCTGAATCCTCCTCATCTCGGTCCAAATTGGTCAGAAAAAAGTAA 1638 0.4396 MDQLSAISEDLAEIDGHIADNFRALSNGFQKLEKIKDSSRQSRQLEELTEKLRECKRLIKDFDKEVKTYEKSYDRDTNKMLNEKKQSMIKELNSYVALKKQYATNIENKRIELFEGPNEGYEEENVLLASSMTNEQLVGRGNQMMDETDQAIERGKKVVQETINVGTDTAAALKAQTEQMSRVVNELDSIHFSMRKASKLVKEIGRQVATDKCIMALLFLIVIGVIAIIIVKVRELVHPGNKDIRDIPGLAPPNLPYYYDVLVYIEVMVAEVVNVEFFHYDLVWIRVGDESLRQEQIRTRIAQEEKPPPPRREPRRQLHRGHKEWLAEVQFLGIVNHPNLVKLLGYCSVDGERGIQRLLVYEFMPNRSLEDHLFNKNLPTLPWKTRLQIMLGASQGLAYLHGGLEIQVVGTQGYAAPEYIETGHLKVQSDMWSFGVVLYEILTGRRSLERNRPTAEQKLLDWVKQYPADTSRFVVIMDPRLRNQYSLPAARKIAKLADSCLKKNPEDRPSMTQIVESLKQALQFSDTSQDIAESSSSRSKLVRKK 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0617 545 Gene3D - 134 212 - -
Aed6g0617 545 Gene3D Transferase(Phosphotransferase) domain 1 405 541 - -
Aed6g0617 545 Pfam Protein tyrosine and serine/threonine kinase 320 401 IPR001245 GO:0004672|GO:0006468
Aed6g0617 545 PANTHER NOVEL PLANT SNARE 11 1 253 - -
Aed6g0617 545 MobiDBLite consensus disorder prediction 299 318 - -
Aed6g0617 545 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 142 204 IPR000727 -
Aed6g0617 545 Coils Coil 38 72 - -
Aed6g0617 545 SUPERFAMILY SNARE fusion complex 132 205 - -
Aed6g0617 545 Pfam Protein kinase domain 407 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g0617 545 SUPERFAMILY Protein kinase-like (PK-like) 321 518 IPR011009 -
Aed6g0617 545 SMART tSNARE_6 137 204 IPR000727 -
Aed6g0617 545 Gene3D Transferase(Phosphotransferase) domain 1 310 404 - -
Aed6g0617 545 ProSiteProfiles Protein kinase domain profile. 132 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g0617 545 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 1 253 - -
Aed6g0617 545 CDD SNARE_SNAP25N_23N_29N_SEC9N 140 203 IPR044766 GO:0005484|GO:0031201
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0617 Aed-Chr6 5240725 5251029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0617 320 539 Receptor kinase-like Gene Family AT3G58690 34.962 4.01e-42 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Aed6g0617 Pkinase 8.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0617 K08494 - gmx:100796579 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0617 6 5240725 5251029 Aed6g0617 6 5240725 5251029 ECH
Aed11g1568 11 19861690 19864513 Aed6g0617 6 5240725 5251029 PCT