Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0601 ATGGAACTTCATAATATTAAGCACCTTTTTGGCCTTGCTTGTGTCATACTTCTCTTACCTGCACTGTGTAGCTCACAGGACTCTTTCACAGACTCCAGAGCAACATATTATGGTAGCCCTGATTGTTATGGGAATCCAAGGGGAGCTTGTGGCTTTGGCGAATATGGAAGGACAGTGAATGATGGAAGTGTGGCAGGAGCAAGGTGCAAGATTCCACAACATTGCGATGAAAATGGAGCATATGTGGTGGTAACAGACTATGGTGAGGGAGACAGAACAGACTTCATAATGAGTCCACGCGCCTACTCGAGATTGGGACGCAACGCTGATGCATCTGCAGAGTTGTTCAAATACGGTGTAGTGGATATTGAATACAGAAGAGTACCCTGCAGTTACACTGGCTATAATGTCGTGTTTAAGGTTCATGAACACAGCAGAAACCCTGACTACTTTGCTGTCGTGGTTCTCTATCAAGACTGCCAAGAATGGAAGCCAATGCGGAGGGCATTTGGGGCAATGTTTGACTATAGCAACCCACCAAGGGGCGAGATATACTTGAAGTTCCAAGTGAGTGGTAGTGCAGGGCTTTACTGGGTGCAGTCCAAGAATGCCATCTCTGGTGATTGGAAGGCTGGATTAACATATGACACCATGGTTCAGCTTAATTAG 669 0.4604 MELHNIKHLFGLACVILLLPALCSSQDSFTDSRATYYGSPDCYGNPRGACGFGEYGRTVNDGSVAGARCKIPQHCDENGAYVVVTDYGEGDRTDFIMSPRAYSRLGRNADASAELFKYGVVDIEYRRVPCSYTGYNVVFKVHEHSRNPDYFAVVVLYQDCQEWKPMRRAFGAMFDYSNPPRGEIYLKFQVSGSAGLYWVQSKNAISGDWKAGLTYDTMVQLN 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0601 222 Gene3D - 131 218 IPR036749 -
Aed6g0601 222 SUPERFAMILY PHL pollen allergen 135 217 IPR036749 -
Aed6g0601 222 Pfam Expansin C-terminal domain 137 205 IPR007117 -
Aed6g0601 222 SUPERFAMILY Barwin-like endoglucanases 15 134 IPR036908 -
Aed6g0601 222 PANTHER EXPANSIN-B3 5 222 - -
Aed6g0601 222 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 135 217 IPR007117 -
Aed6g0601 222 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 20 135 IPR007112 -
Aed6g0601 222 PANTHER EXPANSIN-B1-LIKE PROTEIN 5 222 - -
Aed6g0601 222 Gene3D - 20 130 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0601 Aed-Chr6 5085493 5087602 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0601 4 221 Expansin Gene Family AT4G17030 51.004 3.02e-87 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0601 - - gmx:100779487 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1578 11 19924689 19926413 Aed6g0601 6 5085493 5087602 PCT